New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3417655 =	24 (0.760)	3 (0.100)	3/244	NT	11.0%	coding (429/804 nt)	PP_3030	hypothetical protein
	?	NC_002947	3417679 =	25 (0.800)					coding (405/804 nt)	PP_3030	hypothetical protein

TGCAGTGCGGCTTCGATTGCCTGTGCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGCCTGCTGCTTCGCAGCAGAGACTTTTTGTTTTTTGCGCTTCGACAACA  >  NC_002947/3417536‑3417826                                                                                                                                                 |                                                                                                                                                    tgcAGTGCGGCTTCGATTGCCTGTGCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACtt                                                                                                                                               <  1:848016/150‑1 (MQ=255)        cGGCTTCGATTGCCTGTGCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGa                                                                                                                                        >  2:658851/1‑150 (MQ=255)           cTTCGATTGCCTGTGCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTa                                                                                                                                     >  1:48410/1‑150 (MQ=255)            ttCGATTGCCTGTGCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAg                                                                                                                                    >  2:18981/1‑150 (MQ=255)                 caggcattattccccccatcagcagccccgccgaggcactgataccccacaacaagctgcgcgaggcaccgcccgctgatgcaacgctaatcgctaaaagtcgcccccacggcaggctgcgcgtgcggGCGACTTTTAGCGATTAGCGtt                                                                                                                                <  1:720193‑M2/22‑1 (MQ=255)                      tgtgCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCa                                                                                                                          <  2:405465/150‑1 (MQ=255)                        tgCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAgc                                                                                                                        >  2:341159/1‑150 (MQ=255)                          ccATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAgagg                                                                                                                      >  1:511227/1‑150 (MQ=255)                             cccccatcagcagccccgccgaggcactgataccccacaacaagctgcgcgaggcaccgcccgctgatgcaacgctaatcgctaaaagtcgcccccacggcaggctgcgcgtgcggGCGACTTTTAGCGATTAGCGTTGCAt                                                                                                                            >  2:614501‑M2/117‑142 (MQ=255)                             cccccatcagcagccccgccgaggcactgataccccacaacaagctgcgcgaggcaccgcccgctgatgcaacgctaatcgctaaaagtcgcccccacggcaggctgcgcgtgcggGCGACTTTTAGCGATTAGCGTTGCAt                                                                                                                            <  1:614501‑M2/26‑1 (MQ=255)                                             gtacgtacCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCtt                                                                                                   <  2:48410/150‑1 (MQ=255)                                                   acCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTtgtg                                                                                             >  1:693814/1‑150 (MQ=255)                                                    ccGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTgg                                                                                            <  2:34796/150‑1 (MQ=255)                                                     cGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTggg                                                                                           <  1:132566/150‑1 (MQ=255)                                                       ttCTGCTCGACCAGTGTCGCGGCCATCGGGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGt                                                                                         >  2:440713/1‑150 (MQ=255)                                                             tCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGc                                                                                                     <  2:587846/132‑1 (MQ=255)                                                             tCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGc                                                                                                     >  1:587846/1‑132 (MQ=255)                                                                          cgTTCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGGTGTGTGGTATCAGTGCCTCGGCGGGgc                                                                      <  1:341309/150‑1 (MQ=255)                                                                             ccATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGgctgc                                                                   <  1:139514/150‑1 (MQ=255)                                                                                            tGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTg                                                                                                                <  1:584387/90‑1 (MQ=255)                                                                                            ggCAGCTGGCGGCAGAGGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCTCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGaataa                                                    <  2:332204/149‑1 (MQ=255)                                                                                            cgCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTg                                                                                                                >  2:584387/2‑90 (MQ=255)                                                                                              atgcaacgctaatcgctaaaagtcgcCCGCACGCGCAGCCTGC‑CGTGGGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATggggg                                                          >  2:614501‑M1/27‑142 (MQ=255)                                                                                              atgcaacgctaatcgctaaaagtcgcCCGCACGCGCAGCCTGC‑CGTGGGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATggggg                                                          <  1:614501‑M1/116‑1 (MQ=255)                                                                                               aGCTGGCGGCAGATGGGTGCGTATACACCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGc                                                 >  2:40096/1‑150 (MQ=255)                                                                                                  tGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGt                                                                                   >  1:500367/1‑113 (MQ=255)                                                                                                  tGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGt                                                                                   <  2:500367/113‑1 (MQ=255)                                                                                                  aacgctaatcgctaaaagtcgcCCGCACGCGCAGCCTGC‑CGTGGGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGCctg                                              <  1:720193‑M1/128‑1 (MQ=255)                                                                                                             gggTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGCCTGCTGCTTCgcag                                   >  2:198219/1‑150 (MQ=255)                                                                                                                         CCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGCCTGCTGCTTCGCAGCAGAGACttttt                       <  2:301390‑M1/150‑1 (MQ=255)                                                                                                                         CCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGCCTGCTGCTTCGCAGCAGAGACttttt                       <  1:439823‑M1/150‑1 (MQ=255)                                                                                                                                   ggCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGCCTGCTGCTTCGcagcag                                >  2:231334/1‑132 (MQ=255)                                                                                                                                   ggCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGCCTGCTGCTTCGcagcag                                <  1:231334/132‑1 (MQ=255)                                                                                                                                               gggCCACTTTTAGCGATAAGCGTTGAGGCAGGAGGCGGCGTCTCTCGGTGCGGGGGGTGGGGTATCAGTGCCTCGGCGGCGATGCCGATGGCGGCGATAATGTCTATAAGTTGATGGCTTTGTCTTTTTGTTTTTTGCGCTTCGacaccc  >  2:824618/1‑147 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TGCAGTGCGGCTTCGATTGCCTGTGCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGCCTGCTGCTTCGCAGCAGAGACTTTTTGTTTTTTGCGCTTCGACAACA  >  NC_002947/3417536‑3417826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.