New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3417655 =	24 (0.760)	3 (0.100)	3/244	NT	11.0%	coding (429/804 nt)	PP_3030	hypothetical protein
	?	NC_002947	3417679 =	25 (0.800)					coding (405/804 nt)	PP_3030	hypothetical protein

GCAGGGAAAAGGAACCCGGCTTGCTGCAGTGCGGCTTCGATTGCCTGTGCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGCCTGCTGCTTCGCAG  >  NC_002947/3417512‑3417793                                                                                                                                                |                                                                                                                                            gcagGGAAAAGGAACCCGGCTTGCTGCAGTGCGGCTTCGAATGCCTGGGCCATCTGCCCGGAGGTGGCGTACGTACCGTTCAGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCAGGCGGCAGATGGGTGCGTATACCCCACg                                                                                                                                       >  2:139514/1‑150 (MQ=255)                         tgcAGTGCGGCTTCGATTGCCTGTGCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACtt                                                                                                              <  1:848016/150‑1 (MQ=255)                                cGGCTTCGATTGCCTGTGCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGa                                                                                                       >  2:658851/1‑150 (MQ=255)                                   cTTCGATTGCCTGTGCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTa                                                                                                    >  1:48410/1‑150 (MQ=255)                                    ttCGATTGCCTGTGCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAg                                                                                                   >  2:18981/1‑150 (MQ=255)                                              tgtgCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCa                                                                                         <  2:405465/150‑1 (MQ=255)                                                tgCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAgc                                                                                       >  2:341159/1‑150 (MQ=255)                                                  ccATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAgagg                                                                                     >  1:511227/1‑150 (MQ=255)                                                                     gtacgtacCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCtt                                                                  <  2:48410/150‑1 (MQ=255)                                                                           acCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTtgtg                                                            >  1:693814/1‑150 (MQ=255)                                                                            ccGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTgg                                                           <  2:34796/150‑1 (MQ=255)                                                                             cGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTggg                                                          <  1:132566/150‑1 (MQ=255)                                                                               ttCTGCTCGACCAGTGTCGCGGCCATCGGGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGt                                                        >  2:440713/1‑150 (MQ=255)                                                                                     tCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGc                                                                    >  1:587846/1‑132 (MQ=255)                                                                                     tCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGc                                                                    <  2:587846/132‑1 (MQ=255)                                                                                                  cgTTCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGGTGTGTGGTATCAGTGCCTCGGCGGGgc                                     <  1:341309/150‑1 (MQ=255)                                                                                                     ccATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGgctgc                                  <  1:139514/150‑1 (MQ=255)                                                                                                                    tGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTg                                                                               <  1:584387/90‑1 (MQ=255)                                                                                                                    ggCAGCTGGCGGCAGAGGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCTCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGaataa                   <  2:332204/149‑1 (MQ=255)                                                                                                                    cgCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTg                                                                               >  2:584387/2‑90 (MQ=255)                                                                                                                      atgcaacgctaatcgctaaaagtcgcCCGCACGCGCAGCCTGC‑CGTGGGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATggggg                         <  1:614501‑M1/116‑1 (MQ=255)                                                                                                                      atgcaacgctaatcgctaaaagtcgcCCGCACGCGCAGCCTGC‑CGTGGGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATggggg                         >  2:614501‑M1/27‑142 (MQ=255)                                                                                                                       aGCTGGCGGCAGATGGGTGCGTATACACCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGc                >  2:40096/1‑150 (MQ=255)                                                                                                                          tGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGt                                                  >  1:500367/1‑113 (MQ=255)                                                                                                                          tGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGt                                                  <  2:500367/113‑1 (MQ=255)                                                                                                                          aacgctaatcgctaaaagtcgcCCGCACGCGCAGCCTGC‑CGTGGGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGCctg             <  1:720193‑M1/128‑1 (MQ=255)                                                                                                                                     gggTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGCCTGCTGCTTCgcag  >  2:198219/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                            GCAGGGAAAAGGAACCCGGCTTGCTGCAGTGCGGCTTCGATTGCCTGTGCCATCTGCCCGGAGGTGGCGTACGTACCGTTCTGCTCGGCCAGTGTCGCGTCCATCGCGGCTTCTATGCAGCTGGCGGCAGATGGGTGCGTATACCCCACG‑GCAGGCTGCGCGTGCGGGCGACTTTTAGCGATTAGCGTTGCATCAGCGGGCGGTGCCTCGCGCAGCTTGTTGTGGGGTATCAGTGCCTCGGCGGGGCTGCTGATGGGGGGAATAATGCCTGCTGCTTCGCAG  >  NC_002947/3417512‑3417793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.