New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3482829 =	31 (0.980)	5 (0.160)	4/240	NT	14.1%	coding (3138/3804 nt)	PP_3091	membrane protein
	?	NC_002947	3482877 =	31 (1.010)					coding (3090/3804 nt)	PP_3091	membrane protein

GACCCTGCGCGACCCGGCCGGCGAGCAGATCGCCAAGGCCTGGGCGCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3482880‑3482829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGTCGCCCAGGCATACTGGATGGGCAGGCTGAACAGCCCCTGCAGCGAGCGCGACAGGCCATCCTGGCTGGTGTCGACGCTGCTTTCCACGTAGTTGCGCACGGTGGTGATCTCGCTCGGCTGGCCTTCCAGGGTCTCGCTGA  >  NC_002947/3482877‑3483019                                                                                                                                                                                                     GACCCTGCGCGACCCGGCCGGCGAGCAGATCGCCAAGGCCTGGGCGCAGCAGGGTCGCCCAGGCATACTGGATGGGCAGGCTGAACAGCCCCTGCAGCGAGCGCGACAGGCCATCCTGGCTGGTGTCGACGCTGCTTTCCACGTAGTTGC                                               >  2:44126/1‑150 GACCCTGCGCGACCCGGCCGGCGAGCAGATCGCCAAGGCCTGGGCGCAGCAGGGTCGCCCAGGCATACTGGATGGGCAGGCTGAACAGCCCCTGCAGCGAGCGCGACA                                                                                         >  1:607951/1‑108 GACCCTGCGCGACCCGGCCGGCGAGCAGATCGCCAAGGCCTGGGCGCAGCAGGGTCGCCCAGGCATACTGGATGGGCAGGCTGAACAGCCCCTGCAGCGAGCGCGACA                                                                                         <  2:607951/108‑1   CCCTGCGCGACCCGGCCGGCGAGCAGATCGCCAAGGCCTGGGCGCAGCAGGGTCGCCCAGGCATACTGGATGGGCAGGCTGAACAGCCCCTGCAGCGAGCGCGACAGGCCATCCTGGCTGGTGTCGACGCTGCTTTCCACGTAGTTGCGC                                             >  2:15683/1‑150    CCTGCGCGACCCGGCCGGCGAGCAGATCGCCAAGGCCTGGGC‑‑‑GCAGGGTCGCCCAGGCATACTGGACGGGCAGGCTGAACAGCCCCTGCAGCGAGCGCGACAGGCCATCCTGGCTGGTGTCGACGCTGCTTTCCACGTAGTTGCGCACGG                                         >  1:611777/1‑150                                              GCAGCAGGGTCGCACAGGCCTCCTGGATAGGGATGCTGAACAGCCCCTGCAGCGCGCGCGATTTGTCCCCCGGGCTGGTGTCGACGCTGCTTTCCACGTAGTTGCGCACGGTGGTGATCTCGCTCGGCTGGCCTTCCAGGGTCTCGCTGA  <  1:15683/150‑1                                                                                                                                                                                                     GACCCTGCGCGACCCGGCCGGCGAGCAGATCGCCAAGGCCTGGGCGCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3482880‑3482829 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagGGTCGCCCAGGCATACTGGATGGGCAGGCTGAACAGCCCCTGCAGCGAGCGCGACAGGCCATCCTGGCTGGTGTCGACGCTGCTTTCCACGTAGTTGCGCACGGTGGTGATCTCGCTCGGCTGGCCTTCCAGGGTCTCGCTGA  >  NC_002947/3482877‑3483019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.