New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3632487	21 (0.660)	3 (0.100)	3/240	NT	13.2%	coding (1338/1368 nt)	PP_5590	hypothetical protein
	?	NC_002947	= 3632505	19 (0.620)					coding (1356/1368 nt)	PP_5590	hypothetical protein

TGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3632423‑3632487 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccCTCGCC‑‑GGCCATGGCGTCGGCGGTGAACACCGAGTCCTTGTAGGGCGGCACGATGCGGTACTGTTCGTTCTTGCCTGCGAACAGGTCACCGGCGAACCAGGCACCGGAGAGCAGGTCGTAGAAGCCGTTGGTCAAGGTCACCACGCCCG  <  NC_002947/3632505‑3632357                                                                                                                                                                                                                          TGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCCTCGCC‑‑GGCCATGGCGTCGGCGGT                                                                                                                               <  1:338357/89‑1 TGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCCTCGCC‑‑GGCCATGGCGTCGGCGGT                                                                                                                               >  2:338357/1‑89                                          TACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGGTGAACACCGAGTCCTTGTAGGGCGGCACGATGAGGTACTGTTCGTTCTTGCCTGCGAACAGGTCACCGGCGAACCAGGCACCGGAGAGCCGGTCGTAGAAGCC                         >  1:762769/1‑150                                                                 CCTCGCC‑‑GGCCATGGCGTCGGCGGTGAACACCGAGTCCTTGTAGGGCGGCACGATGCGGTACTGTTCGTTCTTGCCTGCGAACAGGTCACCGGCGAACCAGGCACCGGAGAGCAGGTCGTAGAAGCCGTTGGTCAAGGTCACCACGCCCG  >  1:493254/1‑150                                                                                                                                                                                                                          TGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3632423‑3632487 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccCTCGCC‑‑GGCCATGGCGTCGGCGGTGAACACCGAGTCCTTGTAGGGCGGCACGATGCGGTACTGTTCGTTCTTGCCTGCGAACAGGTCACCGGCGAACCAGGCACCGGAGAGCAGGTCGTAGAAGCCGTTGGTCAAGGTCACCACGCCCG  <  NC_002947/3632505‑3632357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.