New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3632487	21 (0.660)	3 (0.100)	3/240	NT	13.2%	coding (1338/1368 nt)	PP_5590	hypothetical protein
	?	NC_002947	= 3632505	19 (0.620)					coding (1356/1368 nt)	PP_5590	hypothetical protein

CGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACGGCTGGCTGCTGGCAGCCTGTTGCGGGCTGCCGCCGGCGTTCGCCGGT  >  NC_002947/3632357‑3632637                                                                                                                                                       |                                                                                                                                     cGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGg                                                                                                                                     >  1:493254‑M2/1‑149 (MQ=255)         gtgACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTgcgc                                                                                                                             >  2:255764/1‑150 (MQ=255)          tgACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCt                                                                                                                            <  2:701301/150‑1 (MQ=255)                   ccaacGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCTAGGGCGTGCGCTGAGCAGgcg                                                                                                                   >  2:440557‑M2/6‑150 (MQ=255)                        ggCTTCTACGACCGGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCTCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCCTCGCC‑‑GGCCATGGCGTCggcggtgaacaccgagtccttgta                                                                                                              >  1:762769‑M2/1‑126 (MQ=255)                            tCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCa                                                                                                          <  1:703158/150‑1 (MQ=255)                             cTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAg                                                                                                         <  1:255764/150‑1 (MQ=255)                                cGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCAGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGAACATTGAGCAGGTg                                                                                                      <  2:672998/150‑1 (MQ=255)                                                          ccGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGACGACGCCATGGCC‑‑GGCGAGGCCGTGCGCTGAGCAGGCGCGCTGCCCAGGTGCTGTACCGACTCTAAGAACAAAAGGt                                                                            >  2:167014/1‑150 (MQ=255)                                                                        gCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGCCTCTACGACCAAAAGGTTGCGTGCGATGacc                                                              <  2:228478/150‑3 (MQ=255)                                                                                      acAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTtgc                                                                         <  1:434860/125‑1 (MQ=255)                                                                                      acAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTtgc                                                                         >  2:434860/1‑125 (MQ=255)                                                                                        aGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACggct                                              >  1:65335/1‑150 (MQ=255)                                                                                                         cccTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACGGCTGGCTGCTGGCAGCCTGt                             <  2:215500/150‑1 (MQ=255)                                                                                                            tACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTTCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACGGCTGGCTGCTGGCAGCCTGTTGc                          >  1:454428/1‑150 (MQ=255)                                                                                                               aaGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGc                                                       >  1:794395/1‑118 (MQ=255)                                                                                                               aaGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGc                                                       <  2:794395/118‑1 (MQ=255)                                                                                                                     tCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGCCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACGGCTGGCTACTGGCAGCCTGTTGCGAGCTgccg                 >  2:54981/1‑150 (MQ=255)                                                                                                                       ggTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCt                                                                                                    <  1:808630/65‑1 (MQ=255)                                                                                                                       ggTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCt                                                                                                    >  2:808630/1‑65 (MQ=255)                                                                                                                              aCCGCCGACGCCATGGCC‑‑GGCGAGggcggtgaacaccgagtccttgtagggcggcacgatgcggtactgttcgttcttgcctgcgaaca                                                                     <  1:338357‑M2/89‑66 (MQ=255)                                                                                                                              aCCGCCGACGCCATGGCC‑‑GGCGAGggcggtgaacaccgagtccttgtagggcggcacgatgcggtactgttcgttcttgcctgcgaaca                                                                     >  2:338357‑M2/1‑24 (MQ=255)                                                                                                                              aCCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACGGCTGGCTGCTGGCAGCCTGTTGCGGGCTGCCGCCGGCGTTc        <  1:362713/150‑1 (MQ=255)                                                                                                                               ccgccgATGCTATGGGC‑‑GGCGAGGGCGTGCGGTGAGCAGGCGCGCCGCGCAGGTGCTCTACCGACTCTAAGAACAAAAGGTTGCGTGAGATGAACAAGATGCTCTACGGCTGGCTTCTGGCAGGCTGTTGCGGGCTGCCGCCGGCGTTCg       >  2:79538/1‑150 (MQ=255)                                                                                                                                    gACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACGGCTGGCTGCTGGCAGCCTGTTGCGGGCTGCCGCCGGCGTTCGCCGGt  <  2:809943/150‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                     CGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACGGCTGGCTGCTGGCAGCCTGTTGCGGGCTGCCGCCGGCGTTCGCCGGT  >  NC_002947/3632357‑3632637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.