New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3632487	21 (0.660)	3 (0.100)	3/240	NT	13.2%	coding (1338/1368 nt)	PP_5590	hypothetical protein
	?	NC_002947	= 3632505	19 (0.620)					coding (1356/1368 nt)	PP_5590	hypothetical protein

TGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACGGCTGGCTGCTGGCAGCCTGTTGCGGGCTGCCGCCGGCGTTCGCC  >  NC_002947/3632342‑3632634                                                                                                                                                  |                                                                                                                                                      tgctgcCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACg                                                                                                                                                   >  1:798017/1‑150 (MQ=255)   ctgcCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGcc                                                                                                                                                 >  1:672998/1‑150 (MQ=255)      ccTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATg                                                                                                                                              >  2:362713/1‑150 (MQ=255)        tGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGc                                                                                                                                            >  2:805610/1‑150 (MQ=255)                cGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGg                                                                                                                                  >  1:493254‑M2/1‑149 (MQ=255)                        gtgACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTgcgc                                                                                                                          >  2:255764/1‑150 (MQ=255)                         tgACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCt                                                                                                                         <  2:701301/150‑1 (MQ=255)                                  ccaacGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCTAGGGCGTGCGCTGAGCAGgcg                                                                                                                >  2:440557‑M2/6‑150 (MQ=255)                                       ggCTTCTACGACCGGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCTCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCCTCGCC‑‑GGCCATGGCGTCggcggtgaacaccgagtccttgta                                                                                                           >  1:762769‑M2/1‑126 (MQ=255)                                           tCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCa                                                                                                       <  1:703158/150‑1 (MQ=255)                                            cTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAg                                                                                                      <  1:255764/150‑1 (MQ=255)                                               cGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCAGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGAACATTGAGCAGGTg                                                                                                   <  2:672998/150‑1 (MQ=255)                                                                         ccGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGACGACGCCATGGCC‑‑GGCGAGGCCGTGCGCTGAGCAGGCGCGCTGCCCAGGTGCTGTACCGACTCTAAGAACAAAAGGt                                                                         >  2:167014/1‑150 (MQ=255)                                                                                  tGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCctcgccggccatggcgtcggcggt                                                                                                                               <  1:338357‑M1/89‑25 (MQ=255)                                                                                  tGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCctcgccggccatggcgtcggcggt                                                                                                                               >  2:338357‑M1/1‑65 (MQ=255)                                                                                       gCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGCCTCTACGACCAAAAGGTTGCGTGCGATGacc                                                           <  2:228478/150‑3 (MQ=255)                                                                                                     acAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTtgc                                                                      <  1:434860/125‑1 (MQ=255)                                                                                                     acAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTtgc                                                                      >  2:434860/1‑125 (MQ=255)                                                                                                       aGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACggct                                           >  1:65335/1‑150 (MQ=255)                                                                                                                        cccTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACGGCTGGCTGCTGGCAGCCTGt                          <  2:215500/150‑1 (MQ=255)                                                                                                                           tACAAGGACTCGGTGTTCACCGCCgacgccatggccggcgagggcggtgaacaccgagtccttgtagggcggcacgatgaggtactgttcgttcttgcctgcgaacaggtcaccggcgaaccaggcaccggagagccggtcgtagaagcc                         >  1:762769‑M1/1‑24 (MQ=255)                                                                                                                           tACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTTCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACGGCTGGCTGCTGGCAGCCTGTTGc                       >  1:454428/1‑150 (MQ=255)                                                                                                                              aaGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGc                                                    >  1:794395/1‑118 (MQ=255)                                                                                                                              aaGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGc                                                    <  2:794395/118‑1 (MQ=255)                                                                                                                                    tCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGCCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACGGCTGGCTACTGGCAGCCTGTTGCGAGCTgccg              >  2:54981/1‑150 (MQ=255)                                                                                                                                      ggTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCt                                                                                                 <  1:808630/65‑1 (MQ=255)                                                                                                                                      ggTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCt                                                                                                 >  2:808630/1‑65 (MQ=255)                                                                                                                                             aCCGCCGACGCCATGGCC‑‑GGCGAGggcggtgaacaccgagtccttgtagggcggcacgatgcggtactgttcgttcttgcctgcgaaca                                                                  >  2:338357‑M2/1‑24 (MQ=255)                                                                                                                                             aCCGCCGACGCCATGGCC‑‑GGCGAGggcggtgaacaccgagtccttgtagggcggcacgatgcggtactgttcgttcttgcctgcgaaca                                                                  <  1:338357‑M2/89‑66 (MQ=255)                                                                                                                                             aCCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACGGCTGGCTGCTGGCAGCCTGTTGCGGGCTGCCGCCGGCGTTc     <  1:362713/150‑1 (MQ=255)                                                                                                                                              ccgccgATGCTATGGGC‑‑GGCGAGGGCGTGCGGTGAGCAGGCGCGCCGCGCAGGTGCTCTACCGACTCTAAGAACAAAAGGTTGCGTGAGATGAACAAGATGCTCTACGGCTGGCTTCTGGCAGGCTGTTGCGGGCTGCCGCCGGCGTTCg    >  2:79538/1‑150 (MQ=255)                                                                                                                                                  cctcgccggccatggcgtcggcggtgaacaccgagtccttgtagggcggcacgatgcggtactgttcgttcttgcctgcgaacaggtcaccggcgaaccaggcaccggagagcaggtcgtagaagccgttggtcaaggtcaccacgcccg  >  1:493254‑M1/1‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      TGCTGCCTGACCTGCCGGGCGTGGTGACCTTGACCAACGGCTTCTACGACCTGCTCTCCGGTGCCTGGTTCGCCGGTGACCTGTTCGCAGGCAAGAACGAACAGTACCGCATCGTGCCGCCCTACAAGGACTCGGTGTTCACCGCCGACGCCATGGCC‑‑GGCGAGGGCGTGCGCTGAGCAGGCGCGCTGCGCAGGTGCTGTACCGACTCTAAGAACAAAAGGTTGCGTGCGATGAACAAGATGCTCTACGGCTGGCTGCTGGCAGCCTGTTGCGGGCTGCCGCCGGCGTTCGCC  >  NC_002947/3632342‑3632634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.