| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3807589 | 38 (1.200) | 4 (0.130) | 4/238 | NT | 10.3% | coding (2162/2544 nt) | PP_3364 | two‑component system response regulator |
| ? | NC_002947 | = 3807615 | 33 (1.090) | coding (2188/2544 nt) | PP_3364 | two‑component system response regulator | |||||
TTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3807513‑3807589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgAGCGCGCTGCAAACGCACCGTTCGCACGGGCCAGAGGCGTGGCCGGGAGAG < NC_002947/3807615‑3807565 TTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGAGCGCGCTGCAAACGCACCGTTCGCACGGGCCAGAGGCGTGGCCGG < 1:791377/123‑1TTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGAGCGCGCTGCAAACGCACCGTTCGCACGGGCCAGAGGCGTGGCCGG > 2:791377/1‑123 GAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGAGCGCGCTGCAAACGCACCGTTCGCACGGGCCAGAGGCGTGGCCGGGAGAG < 1:461295/92‑1 GAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGAGCGCGCTGCAAACGCACCGTTCGCACGGGCCAGAGGCGTGGCCGGGAGAG > 2:461295/1‑92 TTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3807513‑3807589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgAGCGCGCTGCAAACGCACCGTTCGCACGGGCCAGAGGCGTGGCCGGGAGAG < NC_002947/3807615‑3807565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |