New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3807589	38 (1.200)	4 (0.130)	4/238	NT	10.3%	coding (2162/2544 nt)	PP_3364	two‑component system response regulator
	?	NC_002947	= 3807615	33 (1.090)					coding (2188/2544 nt)	PP_3364	two‑component system response regulator

CGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAGGACCAAGC  >  NC_002947/3807447‑3807730                                                                                                                                               |                                                                                                                                              cGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTg                                                                                                                                             <  1:581830/145‑1 (MQ=255) cGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTAGCCCGTg                                                                                                                                             >  2:581830/1‑145 (MQ=255)       aTCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCg                                                                                                                                  <  2:598987/150‑1 (MQ=255)       aTCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCg                                                                                                                                  >  1:598987/1‑150 (MQ=255)         cccGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCGCGGCCACGCCTCTGGCCCGTGCGAACGGTGc                                                                                                                                   <  2:590433/147‑1 (MQ=255)         cccGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCGCGGCCACGCCTCTGGCCCGTGCGAACGGTGc                                                                                                                                   >  1:590433/1‑147 (MQ=255)            gTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGc                                                                                                                             >  1:110844/1‑150 (MQ=255)                 aCCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAgcgc                                                                                                                        >  1:317272/1‑150 (MQ=255)                             ccAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTtgt                                                                                                            <  2:78755/150‑1 (MQ=255)                             ccAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGAAGCATAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTtgt                                                                                                            >  2:590376/1‑150 (MQ=255)                                   cgGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGc                                                                                                      <  2:318066/150‑1 (MQ=255)                                           tatCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCCCTCCCGGCCTCGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTc                                                                                              <  1:268550/150‑1 (MQ=255)                                                ccccGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGa                                                                                         >  1:158114/1‑150 (MQ=255)                                                 cccGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGAt                                                                                        >  1:742146/1‑150 (MQ=255)                                                 cccGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGAt                                                                                        >  2:378748/1‑150 (MQ=255)                                                         ccTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGt                                                                                <  2:110844/150‑1 (MQ=255)                                                         ccTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGt                                                                                <  2:130489/150‑1 (MQ=255)                                                           tGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGa                                                                                            <  1:701781/136‑1 (MQ=255)                                                           tGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGa                                                                                            >  2:701781/1‑136 (MQ=255)                                                                   tttttCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGagcgcgctgcaaacgcaccgttcgcacgggccagaggcgtggccgg                                                                                                 <  1:791377‑M1/123‑47 (MQ=255)                                                                   tttttCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGagcgcgctgcaaacgcaccgttcgcacgggccagaggcgtggccgg                                                                                                 >  2:791377‑M1/1‑77 (MQ=255)                                                                   tttttCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTa                                                                      <  2:317272/150‑1 (MQ=255)                                                                           aaTCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGa                                                              <  1:512646/150‑1 (MQ=255)                                                                             tCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGa                                                              >  1:708136/1‑148 (MQ=255)                                                                             tCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGa                                                              <  2:708136/148‑1 (MQ=255)                                                                                            tttCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGc                                                                                                      <  1:672745/93‑1 (MQ=255)                                                                                            tttCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGc                                                                                                      >  2:672745/1‑93 (MQ=255)                                                                                              tCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATgcg                                           <  1:79695/150‑1 (MQ=255)                                                                                                cGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGTATCAACTGGTGATTg                                                                           >  1:329813/1‑116 (MQ=255)                                                                                                cGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTg                                                                           <  2:329813/116‑1 (MQ=255)                                                                                                 gTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCaa                                        >  1:789868/1‑150 (MQ=255)                                                                                                       gAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGagcgcgctgcaaacgcaccgttcgcacgggccagaggcgtggccgggagag                                                                                            >  2:461295‑M1/1‑41 (MQ=255)                                                                                                       gAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGagcgcgctgcaaacgcaccgttcgcacgggccagaggcgtggccgggagag                                                                                            <  1:461295‑M1/92‑52 (MQ=255)                                                                                                       gAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATtctc                                                    >  2:259854/1‑132 (MQ=255)                                                                                                       gAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATtctc                                                    <  1:259854/132‑1 (MQ=255)                                                                                                          gCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGAc                               <  2:158114/150‑1 (MQ=255)                                                                                                            cgCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAAGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGt                             <  1:311509/149‑1 (MQ=255)                                                                                                                    ccGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCaa                                                  >  2:799244/1‑121 (MQ=255)                                                                                                                    ccGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCaa                                                  <  1:799244/121‑1 (MQ=255)                                                                                                                       ctctCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTcgggccagaggcgtggccgggagagcggtttctgccgcttc                                                                            >  2:461295‑M2/1‑51 (MQ=255)                                                                                                                       ctctCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTcgggccagaggcgtggccgggagagcggtttctgccgcttc                                                                            <  1:461295‑M2/92‑42 (MQ=255)                                                                                                                       ctctCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCa                  <  2:233727/150‑1 (MQ=255)                                                                                                                            ccGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTcgggccagaggcgtggccgggagagcggtttctgccgcttcggctacggaaaggtgcttggccgggattctgaaaaa                                        <  1:791377‑M2/123‑78 (MQ=255)                                                                                                                            ccGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTcgggccagaggcgtggccgggagagcggtttctgccgcttcggctacggaaaggtgcttggccgggattctgaaaaa                                        >  2:791377‑M2/1‑46 (MQ=255)                                                                                                                               gCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAg          <  1:378748/150‑1 (MQ=255)                                                                                                                               gCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGCGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAg          <  1:188447/150‑1 (MQ=255)                                                                                                                                      ctctGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAGGACCAAg   >  2:264638/1‑150 (MQ=255)                                                                                                                                       tctGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAGGACCAAGc  >  1:763653/1‑150 (MQ=255)                                                                                                                                               |                                                                                                                                              CGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAGGACCAAGC  >  NC_002947/3807447‑3807730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.