New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3807589	38 (1.200)	4 (0.130)	4/238	NT	10.3%	coding (2162/2544 nt)	PP_3364	two‑component system response regulator
	?	NC_002947	= 3807615	33 (1.090)					coding (2188/2544 nt)	PP_3364	two‑component system response regulator

CCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAGGACCAAGCCATGCAACTGCTTGGCAGCCACAAGCC  >  NC_002947/3807475‑3807757                                                                                                                                             |                                                                                                                                               ccAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTtgt                                                                                                                                       <  2:78755/150‑1 (MQ=255) ccAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGAAGCATAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTtgt                                                                                                                                       >  2:590376/1‑150 (MQ=255)       cgGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGc                                                                                                                                 <  2:318066/150‑1 (MQ=255)               tatCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCCCTCCCGGCCTCGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTc                                                                                                                         <  1:268550/150‑1 (MQ=255)                    ccccGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGa                                                                                                                    >  1:158114/1‑150 (MQ=255)                     cccGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGAt                                                                                                                   >  2:378748/1‑150 (MQ=255)                     cccGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGAt                                                                                                                   >  1:742146/1‑150 (MQ=255)                             ccTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGt                                                                                                           <  2:130489/150‑1 (MQ=255)                             ccTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGt                                                                                                           <  2:110844/150‑1 (MQ=255)                               tGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGa                                                                                                                       >  2:701781/1‑136 (MQ=255)                               tGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGa                                                                                                                       <  1:701781/136‑1 (MQ=255)                                       tttttCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTa                                                                                                 <  2:317272/150‑1 (MQ=255)                                               aaTCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGa                                                                                         <  1:512646/150‑1 (MQ=255)                                                 tCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGa                                                                                         >  1:708136/1‑148 (MQ=255)                                                 tCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGa                                                                                         <  2:708136/148‑1 (MQ=255)                                                                tttCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGc                                                                                                                                 <  1:672745/93‑1 (MQ=255)                                                                tttCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGc                                                                                                                                 >  2:672745/1‑93 (MQ=255)                                                                  tCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATgcg                                                                      <  1:79695/150‑1 (MQ=255)                                                                    cGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGTATCAACTGGTGATTg                                                                                                      >  1:329813/1‑116 (MQ=255)                                                                    cGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTg                                                                                                      <  2:329813/116‑1 (MQ=255)                                                                     gTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCaa                                                                   >  1:789868/1‑150 (MQ=255)                                                                           gAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATtctc                                                                               >  2:259854/1‑132 (MQ=255)                                                                           gAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATtctc                                                                               <  1:259854/132‑1 (MQ=255)                                                                              gCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGAc                                                          <  2:158114/150‑1 (MQ=255)                                                                                cgCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAAGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGt                                                        <  1:311509/149‑1 (MQ=255)                                                                                        ccGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCaa                                                                             >  2:799244/1‑121 (MQ=255)                                                                                        ccGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCaa                                                                             <  1:799244/121‑1 (MQ=255)                                                                                           ctctCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTcgggccagaggcgtggccgggagagcggtttctgccgcttc                                                                                                       >  2:461295‑M2/1‑51 (MQ=255)                                                                                           ctctCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTcgggccagaggcgtggccgggagagcggtttctgccgcttc                                                                                                       <  1:461295‑M2/92‑42 (MQ=255)                                                                                           ctctCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCa                                             <  2:233727/150‑1 (MQ=255)                                                                                                ccGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTcgggccagaggcgtggccgggagagcggtttctgccgcttcggctacggaaaggtgcttggccgggattctgaaaaa                                                                   <  1:791377‑M2/123‑78 (MQ=255)                                                                                                ccGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTcgggccagaggcgtggccgggagagcggtttctgccgcttcggctacggaaaggtgcttggccgggattctgaaaaa                                                                   >  2:791377‑M2/1‑46 (MQ=255)                                                                                                   gCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAg                                     <  1:378748/150‑1 (MQ=255)                                                                                                   gCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGCGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAg                                     <  1:188447/150‑1 (MQ=255)                                                                                                          ctctGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAGGACCAAg                              >  2:264638/1‑150 (MQ=255)                                                                                                           tctGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAGGACCAAGc                             >  1:763653/1‑150 (MQ=255)                                                                                                                             tGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCa                                             >  1:752369/1‑116 (MQ=255)                                                                                                                             tGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCa                                             <  2:752369/116‑1 (MQ=255)                                                                                                                                      aGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAGGACCAAGCCATGCAACTGCTTGGCAGCCACAAGcc  <  2:391960/150‑1 (MQ=255)                                                                                                                                             |                                                                                                                                               CCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCACCGCCAGCTCCGAGGACCAAGCCATGCAACTGCTTGGCAGCCACAAGCC  >  NC_002947/3807475‑3807757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.