New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3810649	24 (0.760)	4 (0.130)	4/236	NT	12.9%	coding (723/882 nt)	PP_3366	LysR family transcriptional regulator
	?	NC_002947	= 3810703	31 (1.030)					coding (777/882 nt)	PP_3366	LysR family transcriptional regulator

ACATGGTGGTGTTCGATCGCACCTTCGTTCAACGCCATCTTCTGGATGCGTTCTTCGCCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3810495‑3810649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctgTGCTGGCCGGAACGGCACGCCGACGATGCCTGGCGTGCGTTGCTGCACCGAGCGCAGCAGGGTC  <  NC_002947/3810703‑3810640                                                                                                                                                                                                                             ACATGGTGGTGTTCGATCGCACCTTCGTTCAACGCCATCTTCTGGATGCGTTCTTCGCCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCC                                                                       <  2:787400/150‑1                               AACGCCATCTTCTGGATGCGTTCTTCGCCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGTGCTGGCGGGAACGGCACGCCGACG                                         >  1:381830/1‑150                                                                   GCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGTGCTGGCCGGAACGGCACGCCGACGATGCCTGGCGTGCGTTGCTGCACCGAGCGCAGCAGG     <  2:381830/150‑1                                                                                                   TTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGTGCTGGCCGGAACGGCACGCCGACGATGCCTGGCGTGCGTTGCTGCACCGAGCGCAGCAGGGTC  >  1:773339/1‑121                                                                                                   TTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGTGCTGGCCGGAACGGCACGCCGACGATGCCTGGCGTGCGTTGCTGCACCGAGCGCAGCAGGGTC  <  2:773339/121‑1                                                                                                                                                                                                                             ACATGGTGGTGTTCGATCGCACCTTCGTTCAACGCCATCTTCTGGATGCGTTCTTCGCCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3810495‑3810649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctgTGCTGGCCGGAACGGCACGCCGACGATGCCTGGCGTGCGTTGCTGCACCGAGCGCAGCAGGGTC  <  NC_002947/3810703‑3810640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.