New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3810649	24 (0.760)	4 (0.130)	4/236	NT	12.9%	coding (723/882 nt)	PP_3366	LysR family transcriptional regulator
	?	NC_002947	= 3810703	31 (1.030)					coding (777/882 nt)	PP_3366	LysR family transcriptional regulator

ATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGAGCAATCACCTGCT  >  NC_002947/3810563‑3810845                                                                                                                                             |                                                                                                                                               aTCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATg                                                                                                                                       >  2:233944/1‑150 (MQ=255)          cAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGCGTGGCGACACTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGc                                                                                                                              >  2:357698/1‑150 (MQ=255)                          gCACCTTGGTCTGGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCgg                                                                                                              <  2:110947/150‑1 (MQ=255)                                   tctcGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATAcc                                                                                                     >  1:164843/1‑150 (MQ=255)                                     tcGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCt                                                                                                    >  1:563176/1‑149 (MQ=255)                                     tcGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCt                                                                                                    <  2:563176/149‑1 (MQ=255)                                       gCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTc                                                                                                 >  2:563392/1‑150 (MQ=255)                                               tgCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCa                                                                                         <  1:398775/150‑1 (MQ=255)                                                gCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCt                                                                                                                             <  1:498714/113‑1 (MQ=255)                                                gCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCt                                                                                                                             >  2:498714/1‑113 (MQ=255)                                                        cgcTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTCCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGt                                                                                <  1:233944/150‑1 (MQ=255)                                                             gACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATc                                                                           >  1:555241/1‑150 (MQ=255)                                                                         gTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGca                                                               >  1:765523/1‑150 (MQ=255)                                                                         gTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGca                                                               >  1:127183/1‑150 (MQ=255)                                                                              gACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCAcagcagggtcgccacccccatgttgtccagcgcggcctgcaccaccagcgagacgaa                                                                                       <  2:773339‑M2/121‑58 (MQ=255)                                                                              gACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCAcagcagggtcgccacccccatgttgtccagcgcggcctgcaccaccagcgagacgaa                                                                                       >  1:773339‑M2/1‑64 (MQ=255)                                                                                 ccTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCAcagcagggtcgccacccccatgttgtccagcgcggcctgcaccaccagcgagacgaagttgctctgtagcgccacctggtaagtgatgc                                                       <  2:381830‑M2/150‑90 (MQ=255)                                                                                       gcgcTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCt                                                 <  2:99282/150‑1 (MQ=255)                                                                                         gcTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTgg                                               >  1:146649/1‑150 (MQ=255)                                                                                           tCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATc                                                                           <  1:637110/120‑1 (MQ=255)                                                                                           tCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATc                                                                           >  2:637110/1‑120 (MQ=255)                                                                                            cGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGc                                            <  1:357698/150‑1 (MQ=255)                                                                                                 cagcaACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGa                                       <  2:765523/150‑1 (MQ=255)                                                                                                          acgcCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGtc                              <  1:25105/150‑1 (MQ=255)                                                                                                              cAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGtcttct                          >  2:840956/1‑150 (MQ=255)                                                                                                                ggCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCCGGCCAGCAAGCGGTTCATCGACTTTGTTGCACCGACGCATTACCTGGAGCGTTGAGGGCCAGTCTTCTgg                        <  2:206800/150‑1 (MQ=255)                                                                                                                    tcttcgGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCga                    <  1:681545/147‑1 (MQ=255)                                                                                                                     cgtcgGCGTGCCGTTCCCGCCAGCAcagcagggtcgccacccccatgttgtccagcgcggcctgcaccaccagcgagacgaagttgctctgtagcgccacctggtaagtgatgccatgttcggcgaagaacgcatccagaagatggcgtt                   >  1:381830‑M2/1‑25 (MQ=255)                                                                                                                       tcgGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGAt                 >  2:82195/1‑150 (MQ=255)                                                                                                                         ggCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGa               <  1:82195/150‑1 (MQ=255)                                                                                                                          gCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGAg              <  1:840956/150‑1 (MQ=255)                                                                                                                            gTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAgg                                     <  2:820225/125‑1 (MQ=255)                                                                                                                            gTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAgg                                     >  1:820225/1‑125 (MQ=255)                                                                                                                                  ttCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATg                >  2:507065/1‑140 (MQ=255)                                                                                                                                  ttCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATg                <  1:507065/140‑1 (MQ=255)                                                                                                                                      ggCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGGCAGTCTTCTGGGCGAGATGAGCAATCACCTGCt  >  1:230226/1‑150 (MQ=255)                                                                                                                                             |                                                                                                                                               ATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCTGGAGCGGTGAGGGCCAGTCTTCTGGGCGAGATGAGCAATCACCTGCT  >  NC_002947/3810563‑3810845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.