New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3810649	24 (0.760)	4 (0.130)	4/236	NT	12.9%	coding (723/882 nt)	PP_3366	LysR family transcriptional regulator
	?	NC_002947	= 3810703	31 (1.030)					coding (777/882 nt)	PP_3366	LysR family transcriptional regulator

TGGTGTTCGATCGCACCTTCGTTCAACGCCATCTTCTGGATGCGTTCTTCGCCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCT  >  NC_002947/3810501‑3810798                                                                                                                                                     |                                                                                                                                                      tggtgTTCGATCGCACCTTCGTTCAACGCCATCTTCTGGATGCGTTCTTCGCCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCtgctgc                                                                                                                                                      >  1:99282/1‑150 (MQ=255)                   tCGTTCAACGCCATCTTCTGGATGCGTTCTTCGCCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAacgca                                                                                                                                    >  1:286944/1‑150 (MQ=255)                      ttCAACGCCATCTTCTGGATGCGTTCTTCGCCGAACATGGCATCACTTACCAGGGGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAacgcacgc                                                                                                                                 >  1:328955/1‑150 (MQ=255)                         aaCGCCATCTTCTGGATGCGTTCTTCGCCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGtgctggcgggaacggcacgccgacg                                                                                                                              >  1:381830‑M1/1‑125 (MQ=255)                                  ggctGGCTGCCTTCTTCGGCAAACATTGCATCACTTACCAGGTGGCGCTACAGAGCAACGTCGTCTCGCTGGTGGTGCAGGTCGCGCTGGACAACATGCGGGTGGTGACCCTGCTGCGCCCGGTGCAGCAACGCACGCCAGGCAtcgtcg                                                                                                                     <  1:548255/148‑1 (MQ=255)                                        aTGCGTTCTTCGCCGAACATGGCATCACTTACCAGGTGGCGCTAAAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGc                                                                                                               <  2:328955/150‑1 (MQ=255)                                         tGCGTTCTTCGTCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCAtcgtc                                                                                                                      <  1:257405/142‑1 (MQ=255)                                         tGCGTTCTTCGTCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCAtcgtc                                                                                                                      >  2:257405/1‑142 (MQ=255)                                         tGCGTTCTTCGCCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGAAAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGcc                                                                                                              >  1:110947/1‑150 (MQ=255)                                                ttcGCCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTgc                                                                                                                                             >  1:774900/1‑112 (MQ=255)                                                ttcGCCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTgc                                                                                                                                             <  2:774900/112‑1 (MQ=255)                                                   gCCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCca                                                                                                    >  1:377497/1‑150 (MQ=255)                                                             gCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGtgctggccggaacggcacgccgacgatgcctggcgtgcgttgctgcaccgagcgcagcagg                                                                                          <  2:381830‑M1/150‑62 (MQ=255)                                                               aTCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATg                                                                                        >  2:233944/1‑150 (MQ=255)                                                                        cAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGCGTGGCGACACTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGc                                                                               >  2:357698/1‑150 (MQ=255)                                                                                        gCACCTTGGTCTGGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCgg                                                               <  2:110947/150‑1 (MQ=255)                                                                                             ttCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGtgctggccggaacggcacgccgacgatgcctggcgtgcgttgctgcaccgagcgcagcagggtc                                                                                       >  1:773339‑M1/1‑57 (MQ=255)                                                                                             ttCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGtgctggccggaacggcacgccgacgatgcctggcgtgcgttgctgcaccgagcgcagcagggtc                                                                                       <  2:773339‑M1/121‑65 (MQ=255)                                                                                                 tctcGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATAcc                                                      >  1:164843/1‑150 (MQ=255)                                                                                                   tcGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCt                                                     >  1:563176/1‑149 (MQ=255)                                                                                                   tcGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCt                                                     <  2:563176/149‑1 (MQ=255)                                                                                                     gCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTc                                                  >  2:563392/1‑150 (MQ=255)                                                                                                             tgCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCa                                          <  1:398775/150‑1 (MQ=255)                                                                                                              gCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCt                                                                              <  1:498714/113‑1 (MQ=255)                                                                                                              gCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCt                                                                              >  2:498714/1‑113 (MQ=255)                                                                                                                      cgcTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTCCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGt                                 <  1:233944/150‑1 (MQ=255)                                                                                                                           gACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATc                            >  1:555241/1‑150 (MQ=255)                                                                                                                                       gTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGca                >  1:765523/1‑150 (MQ=255)                                                                                                                                       gTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGca                >  1:127183/1‑150 (MQ=255)                                                                                                                                            gACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCAcagcagggtcgccacccccatgttgtccagcgcggcctgcaccaccagcgagacgaa                                        >  1:773339‑M2/1‑64 (MQ=255)                                                                                                                                            gACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCAcagcagggtcgccacccccatgttgtccagcgcggcctgcaccaccagcgagacgaa                                        <  2:773339‑M2/121‑58 (MQ=255)                                                                                                                                               ccTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCAcagcagggtcgccacccccatgttgtccagcgcggcctgcaccaccagcgagacgaagttgctctgtagcgccacctggtaagtgatgc        <  2:381830‑M2/150‑90 (MQ=255)                                                                                                                                                     gcgcTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCt  <  2:99282/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      TGGTGTTCGATCGCACCTTCGTTCAACGCCATCTTCTGGATGCGTTCTTCGCCGAACATGGCATCACTTACCAGGTGGCGCTACAGAGCAACTTCGTCTCGCTGGTGGTGCAGGCCGCGCTGGACAACATGGGGGTGGCGACCCTGCTGCGCTCGGTGCAGCAACGCACGCCAGGCATCGTCGGCGTGCCGTTCCGGCCAGCACAGCAGATGAGTTTCCGCTTGTGCTGGCGCTCGGGGGAATACCTGTCGCTGGCCAGCAAGCGGTTCATCGACTTTGCTGCACAGACGCATTACCT  >  NC_002947/3810501‑3810798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.