New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3873412	43 (1.360)	5 (0.170)	5/232	NT	11.6%	coding (772/1452 nt)	PP_3421	sensor histidine kinase
	?	NC_002947	= 3873427	36 (1.220)					coding (757/1452 nt)	PP_3421	sensor histidine kinase

ACGCCTGGGCCAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3873283‑3873412 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaccgcGCCGCACGGCTGCTGGCGGTGCA  <  NC_002947/3873427‑3873405                                                                                                                                                           ACGCCTGGGCCAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCGCCGCACGGCTGCTGGCGGT     <  1:820067/150‑1                                                             CCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCGCCGCACGGCTGCTGGCGGTGCA  <  1:330127/93‑1                                                             CCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCGCCGCACGGCTGCTGGCGGTGCA  >  2:330127/1‑93                                                                                  CCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCGCCGCACGGCTGCTGGCGG      >  1:509209/1‑68                                                                                  CCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCGCCGCACGGCTGCTGGCGG      <  2:509209/68‑1                                                                                                                                                           ACGCCTGGGCCAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3873283‑3873412 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaccgcGCCGCACGGCTGCTGGCGGTGCA  <  NC_002947/3873427‑3873405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.