New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3873412	43 (1.360)	5 (0.170)	5/232	NT	11.6%	coding (772/1452 nt)	PP_3421	sensor histidine kinase
	?	NC_002947	= 3873427	36 (1.220)					coding (757/1452 nt)	PP_3421	sensor histidine kinase

GGGCCAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTGGGGCTCCTTGTAAATCTCGACCATCGCTGTGACC  >  NC_002947/3873289‑3873566                                                                                                                                           |                                                                                                                                            gggCCAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCatga                                                                                                                                  >  1:852157/1‑150 (MQ=255)  ggtcAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAATCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCatgat                                                                                                                                 >  2:203926/4‑150 (MQ=255)              aCTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGcc                                                                                                                     >  2:500007/1‑150 (MQ=255)                  gAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAg                                                                                                                        <  1:340577/143‑1 (MQ=255)                  gAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAg                                                                                                                        >  2:340577/1‑143 (MQ=255)                      ggATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGa                                                                                                             >  1:287943/1‑150 (MQ=255)                       gATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                            <  2:67255/150‑1 (MQ=255)                         tGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGGGGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCa                                                                                                          <  2:204297/150‑1 (MQ=255)                              gCCAGCGGGTTGTGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCa                                                                                                     <  2:768910/150‑1 (MQ=255)                                 aGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAgcg                                                                                                  >  1:675772/1‑150 (MQ=255)                                      gTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGAc                                                                                             >  1:303747/1‑150 (MQ=255)                                      gTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGAc                                                                                             >  1:63034/1‑150 (MQ=255)                                           gcAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                            >  2:389845/1‑130 (MQ=255)                                           gcAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                            <  1:389845/130‑1 (MQ=255)                                             aGGCTATGGCCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCACCCGCAGCCGTGCGGCGCGGTGCGTGATGCCGTACAGGTCGACATAGACCAGTGCAGCGCCGACCGTGATa                                                                                      <  1:700220/150‑1 (MQ=255)                                                    gggCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAAcc                                                                               >  2:751516/1‑150 (MQ=255)                                                           cgccgAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAgatcag                                                                        <  1:203926/150‑1 (MQ=255)                                                                      ccTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                            <  2:70128/103‑1 (MQ=255)                                                                      ccTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                            >  1:70128/1‑103 (MQ=255)                                                                           cccAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCg                                                        >  1:86747/1‑150 (MQ=255)                                                                           cccAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCg                                                        >  1:588350/1‑150 (MQ=255)                                                                             cAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCat                                                                                                                                    <  2:670326/72‑1 (MQ=255)                                                                             cAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGAt                                                      <  2:588350/150‑1 (MQ=255)                                                                             cAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGAt                                                      >  1:774333/1‑150 (MQ=255)                                                                             aaatGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCat                                                                                                                                    >  1:670326/4‑72 (MQ=255)                                                                              aGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATg                                                     >  2:753763/1‑150 (MQ=255)                                                                                  ccACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                            <  1:825764/91‑1 (MQ=255)                                                                                  ccACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                            >  2:825764/1‑91 (MQ=255)                                                                                         ggTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAg                                          <  2:86747/150‑1 (MQ=255)                                                                                         ggTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAg                                          <  2:303747/150‑1 (MQ=255)                                                                                          gTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAgg                                         <  1:82773/150‑1 (MQ=255)                                                                                                 tgctgATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTggg                                  >  2:112260/1‑150 (MQ=255)                                                                                                      aTCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGatcaggatcagg                                                                 <  2:503996/114‑1 (MQ=255)                                                                                                      aTCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGatcaggatcagg                                                                 >  1:503996/1‑114 (MQ=255)                                                                                                      aTCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTGGGGCTcc                             <  2:63034/150‑1 (MQ=255)                                                                                                                    ctgcACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTGGGGCTCCTTGTAAATCTCGAc               >  1:506644/1‑150 (MQ=255)                                                                                                                     tgcACCGCCAGCAGCCGTGCGGCgcggtgcagcagaaacgactgatcagcagcgaaacctacgtggcactgggtgaggtgtcttcggcggtgg                                                                       >  2:330127‑M2/1‑23 (MQ=255)                                                                                                                     tgcACCGCCAGCAGCCGTGCGGCgcggtgcagcagaaacgactgatcagcagcgaaacctacgtggcactgggtgaggtgtcttcggcggtgg                                                                       <  1:330127‑M2/93‑71 (MQ=255)                                                                                                                        aCCGCCAGCAGCCGTGCGGCgcggtgcagcagaaacgactgatcagcagcgaaacctacgtggcactgggtgaggtgtcttcggcggtggcccatagcctgcgcaacccgctggccagcatccgctcaagtgccgaactggcccaggcgt           <  1:820067‑M2/150‑131 (MQ=255)                                                                                                                         ccGCCAGCAGCCGTGCGGCgcggtgcagcagaaacgactgatcagcagcgaaacctacgtggcactgg                                                                                            >  1:509209‑M2/1‑19 (MQ=255)                                                                                                                         ccGCCAGCAGCCGTGCGGCgcggtgcagcagaaacgactgatcagcagcgaaacctacgtggcactgg                                                                                            <  2:509209‑M2/68‑50 (MQ=255)                                                                                                                             cagcagCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTg                                    >  2:146451/1‑120 (MQ=255)                                                                                                                             cagcagCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTg                                    <  1:146451/120‑1 (MQ=255)                                                                                                                               gcagcCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTGGGGCTCCTTGTAAATCTCGACCATCGCTGTGa    <  2:774333/150‑1 (MQ=255)                                                                                                                                 agcCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTGGGGCTCCTTGTAAATCTCGACCATCGCTGTGAcc  >  1:373255/1‑150 (MQ=255)                                                                                                                                           |                                                                                                                                            GGGCCAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTGGGGCTCCTTGTAAATCTCGACCATCGCTGTGACC  >  NC_002947/3873289‑3873566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.