New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3873412	43 (1.360)	5 (0.170)	5/232	NT	11.6%	coding (772/1452 nt)	PP_3421	sensor histidine kinase
	?	NC_002947	= 3873427	36 (1.220)					coding (757/1452 nt)	PP_3421	sensor histidine kinase

CCGGGCCTTCGTCGAACGCCTGGGCCAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTGGGGCTCCTTGTAAATCTCGACCATC  >  NC_002947/3873268‑3873557                                                                                                                                                 |                                                                                                                                                  ccGGGCCTTCGTCGAACGCCTGGGCCAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCcagca                                                                                                                                              <  1:767388/150‑1 (MQ=255)      ccTTCGTCGAACGCCTGGGCCAGTTCGGCCCTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCAACGCCGAGCACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGt                                                                                                                                         >  2:116918/1‑150 (MQ=255)       cTTCGTCGAACGCCTGGGCCAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTg                                                                                                                                        >  2:82773/1‑150 (MQ=255)        ttCGTCGAACGCCTGGGCCAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTgc                                                                                                                                       <  1:790254/150‑1 (MQ=255)                aCGCCTGGGCCAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCgccgcacggctgctggcggt                                                                                                                               <  1:820067‑M1/150‑21 (MQ=255)                      gggCCAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCatga                                                                                                                         >  1:852157/1‑150 (MQ=255)                       ggtcAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAATCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCatgat                                                                                                                        >  2:203926/4‑150 (MQ=255)                             ttCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTgcg                                                                                                                                      >  1:20698/1‑130 (MQ=255)                             ttCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTgcg                                                                                                                                      <  2:20698/130‑1 (MQ=255)                             ttCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTgc                                                                                                                                       >  1:300440/1‑129 (MQ=255)                             ttCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTgc                                                                                                                                       <  2:300440/129‑1 (MQ=255)                                   aCTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGcc                                                                                                            >  2:500007/1‑150 (MQ=255)                                       gAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAg                                                                                                               >  2:340577/1‑143 (MQ=255)                                       gAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAg                                                                                                               <  1:340577/143‑1 (MQ=255)                                           ggATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGa                                                                                                    >  1:287943/1‑150 (MQ=255)                                            gATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                   <  2:67255/150‑1 (MQ=255)                                              tGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGGGGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCa                                                                                                 <  2:204297/150‑1 (MQ=255)                                                   gCCAGCGGGTTGTGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCa                                                                                            <  2:768910/150‑1 (MQ=255)                                                      aGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAgcg                                                                                         >  1:675772/1‑150 (MQ=255)                                                           gTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGAc                                                                                    >  1:63034/1‑150 (MQ=255)                                                           gTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGAc                                                                                    >  1:303747/1‑150 (MQ=255)                                                                gcAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                   >  2:389845/1‑130 (MQ=255)                                                                gcAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                   <  1:389845/130‑1 (MQ=255)                                                                  aGGCTATGGCCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCACCCGCAGCCGTGCGGCGCGGTGCGTGATGCCGTACAGGTCGACATAGACCAGTGCAGCGCCGACCGTGATa                                                                             <  1:700220/150‑1 (MQ=255)                                                                         gggCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAAcc                                                                      >  2:751516/1‑150 (MQ=255)                                                                            ccACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCgccgcacggctgctggcggtgca                                                                                                                            >  2:330127‑M1/1‑70 (MQ=255)                                                                            ccACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCgccgcacggctgctggcggtgca                                                                                                                            <  1:330127‑M1/93‑24 (MQ=255)                                                                                cgccgAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAgatcag                                                               <  1:203926/150‑1 (MQ=255)                                                                                           ccTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                   >  1:70128/1‑103 (MQ=255)                                                                                           ccTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                   <  2:70128/103‑1 (MQ=255)                                                                                                cccAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCg                                               >  1:86747/1‑150 (MQ=255)                                                                                                cccAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCg                                               >  1:588350/1‑150 (MQ=255)                                                                                                 ccAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCgccgcacggctgctggcgg                                                                                                                                >  1:509209‑M1/1‑49 (MQ=255)                                                                                                 ccAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCgccgcacggctgctggcgg                                                                                                                                <  2:509209‑M1/68‑20 (MQ=255)                                                                                                  cAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCat                                                                                                                           <  2:670326/72‑1 (MQ=255)                                                                                                  cAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGAt                                             >  1:774333/1‑150 (MQ=255)                                                                                                  cAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGAt                                             <  2:588350/150‑1 (MQ=255)                                                                                                  aaatGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCat                                                                                                                           >  1:670326/4‑72 (MQ=255)                                                                                                   aGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATg                                            >  2:753763/1‑150 (MQ=255)                                                                                                       ccACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                   <  1:825764/91‑1 (MQ=255)                                                                                                       ccACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGAc                                                                                                   >  2:825764/1‑91 (MQ=255)                                                                                                              ggTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAg                                 <  2:86747/150‑1 (MQ=255)                                                                                                              ggTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAg                                 <  2:303747/150‑1 (MQ=255)                                                                                                               gTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAgg                                <  1:82773/150‑1 (MQ=255)                                                                                                                      tgctgATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTggg                         >  2:112260/1‑150 (MQ=255)                                                                                                                           aTCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGatcaggatcagg                                                        <  2:503996/114‑1 (MQ=255)                                                                                                                           aTCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGatcaggatcagg                                                        >  1:503996/1‑114 (MQ=255)                                                                                                                           aTCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTGGGGCTcc                    <  2:63034/150‑1 (MQ=255)                                                                                                                                         ctgcACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTGGGGCTCCTTGTAAATCTCGAc      >  1:506644/1‑150 (MQ=255)                                                                                                                                          tgcACCGCCAGCAGCCGTGCGGCgcggtgcagcagaaacgactgatcagcagcgaaacctacgtggcactgggtgaggtgtcttcggcggtgg                                                              >  2:330127‑M2/1‑23 (MQ=255)                                                                                                                                          tgcACCGCCAGCAGCCGTGCGGCgcggtgcagcagaaacgactgatcagcagcgaaacctacgtggcactgggtgaggtgtcttcggcggtgg                                                              <  1:330127‑M2/93‑71 (MQ=255)                                                                                                                                             aCCGCCAGCAGCCGTGCGGCgcggtgcagcagaaacgactgatcagcagcgaaacctacgtggcactgggtgaggtgtcttcggcggtggcccatagcctgcgcaacccgctggccagcatccgctcaagtgccgaactggcccaggcgt  <  1:820067‑M2/150‑131 (MQ=255)                                                                                                                                              ccGCCAGCAGCCGTGCGGCgcggtgcagcagaaacgactgatcagcagcgaaacctacgtggcactgg                                                                                   <  2:509209‑M2/68‑50 (MQ=255)                                                                                                                                              ccGCCAGCAGCCGTGCGGCgcggtgcagcagaaacgactgatcagcagcgaaacctacgtggcactgg                                                                                   >  1:509209‑M2/1‑19 (MQ=255)                                                                                                                                                 |                                                                                                                                                  CCGGGCCTTCGTCGAACGCCTGGGCCAGTTCGGCACTTGAGCGGATGCTGGCCAGCGGGTTGCGCAGGCTATGGGCCACCGCCGAAGACACCTCACCCAGTGCCACGTAGGTTTCGCTGCTGATCAGTCGTTTCTGCTGCACCGCCAGCAGCCGTGCGGCGCGGTGCATGATGCCGTAAAGGCCGACATAGACCAGTGCAGCGCCGACCGTGATAGCCAACCAGATCAGGATCAGGCCACGTTCGATGCGTACGATCAGGTCGTGGGGCTCCTTGTAAATCTCGACCATC  >  NC_002947/3873268‑3873557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.