New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3884426	14 (0.440)	4 (0.130)	4/238	NT	20.8%	coding (267/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase
	?	NC_002947	= 3884442	17 (0.560)					coding (283/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase

CTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3884277‑3884426 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccagCGGCCGACCAGGCGCCCTGGGTCAGCAGCACGATGGGCAAATCCGACCAGCTCGGTTGCTGGTCGATGAATGCCTGCAGCAAAGTGCTTGGGCCTTGGCTGAACACCTGCTCGGCAATGATCGCCAACCCTGCGCCCTCGG  <  NC_002947/3884442‑3884302                                                                                                                                                                                                                                                                                                     CTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAG                                                                                                                                               >  1:398273/1‑150                                                                            CCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGCGGCCGACCAGGCGCCCTGG                                                                                                                           <  1:170913/95‑1                                                                            CCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGCGGCCGACCAGGCGCCCTGG                                                                                                                           >  2:170913/1‑95                                                                                            AGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGCGGCCGACCAGGCGCCCTGGGTCAGCAGCACGATG                                                                                                            <  1:102296/94‑1                                                                                            AGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGCGGCCGACCAGGCGCCCTGGGTCAGCAGCACGATG                                                                                                            >  2:102296/1‑94                                                                                                                                              caccgCCAGCGGCCGACCAGGCGCCCTGGGTCAGCAGCACGATGGGCAAATCCGACCAGCTCGGTTGCTGGTCGATGAATGCCTGCAGCAAAGTGCTTGGGCCTTGGCTGAACACCTGCTCGGCAATGATCGCCAACCCTGCGCCCTCGG  >  2:126118/6‑150                                                                                                                                                                                                                                                                                                     CTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3884277‑3884426 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccagCGGCCGACCAGGCGCCCTGGGTCAGCAGCACGATGGGCAAATCCGACCAGCTCGGTTGCTGGTCGATGAATGCCTGCAGCAAAGTGCTTGGGCCTTGGCTGAACACCTGCTCGGCAATGATCGCCAACCCTGCGCCCTCGG  <  NC_002947/3884442‑3884302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.