New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3884426	14 (0.440)	4 (0.130)	4/238	NT	20.8%	coding (267/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase
	?	NC_002947	= 3884442	17 (0.560)					coding (283/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase

CTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCAACCGGCGGCGACAGTACGTGACACGTGAT  >  NC_002947/3884277‑3884567                                                                                                                                                      |                                                                                                                                              cTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAG                                                                                                                                               >  1:398273‑M1/1‑150 (MQ=255)      cAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGgcgc                                                                                                                                          >  1:126118/1‑150 (MQ=255)                       tGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTgggg                                                                                                                         >  2:296823/1‑150 (MQ=255)                          ccGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGctggcggtg                                                                                                                      >  2:126118‑M2/1‑141 (MQ=255)                                           gCGATCATTGCCTAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTggg                                                                                                      <  1:770855/149‑1 (MQ=255)                                           gCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTggg                                                                                                      >  2:770855/1‑149 (MQ=255)                                                    gCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTtctc                                                                                            <  1:296823/150‑1 (MQ=255)                                                      cGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTctg                                                                                          >  2:211297/1‑150 (MQ=255)                                                        aGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTctggc                                                                                        >  1:737995/1‑150 (MQ=255)                                                                       aaGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACg                                                                         >  1:503574/1‑150 (MQ=255)                                                                            ccAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGcggccgaccaggcgccctgg                                                                                                                           <  1:170913‑M1/95‑21 (MQ=255)                                                                            ccAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGcggccgaccaggcgccctgg                                                                                                                           >  2:170913‑M1/1‑75 (MQ=255)                                                                                       gctgcAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTtgct                                                         <  2:691267/150‑1 (MQ=255)                                                                                       gctgcAGGCATTCATCGACCAGCAACCGAGCTGGACGGACTGGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTtgct                                                         <  1:262298/150‑1 (MQ=255)                                                                                            aGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGcggccgaccaggcgccctgggtcagcagcacgatg                                                                                                            >  2:102296‑M1/1‑59 (MQ=255)                                                                                            aGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGcggccgaccaggcgccctgggtcagcagcacgatg                                                                                                            <  1:102296‑M1/94‑36 (MQ=255)                                                                                                                 cGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCa                               >  1:852706/1‑150 (MQ=255)                                                                                                                        gTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAAtcttct                                                                                             >  1:408498/1‑81 (MQ=255)                                                                                                                        gTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAAtcttct                                                                                             <  2:408498/81‑1 (MQ=255)                                                                                                                         tCGGATTTGCACATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCAACcggcgg                       >  2:122000/1‑150 (MQ=255)                                                                                                                                    cATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGctgggtcagcagcacgatgggcaaatccgaccagctcggttgctggtcgatgaatgcct                                                                    >  2:102296‑M2/1‑35 (MQ=255)                                                                                                                                    cATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGctgggtcagcagcacgatgggcaaatccgaccagctcggttgctggtcgatgaatgcct                                                                    <  1:102296‑M2/94‑60 (MQ=255)                                                                                                                                             gctgACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCACCCGGCGTCCACAGTACTTGACACGTGa   <  2:503574/150‑1 (MQ=255)                                                                                                                                              caccgccagcggccgaccaggcgccctgggtcagcagcacgatgggcaaatccgaccagctcggttgctggtcgatgaatgcctgcagcaaagtgcttgggccttggctgaacacctgctcggcaatgatcgccaaccctgcgccctcgg  >  2:126118‑M1/6‑9 (MQ=255)                                                                                                                                                   ccAGGGCGCCTGGTCGGCCGctgggtcagcagcacgatgggcaaatccgaccagctcggttgctggtcgatgaatgcctgcagcaaagtgcttgg                                                    >  2:170913‑M2/1‑20 (MQ=255)                                                                                                                                                   ccAGGGCGCCTGGTCGGCCGctgggtcagcagcacgatgggcaaatccgaccagctcggttgctggtcgatgaatgcctgcagcaaagtgcttgg                                                    <  1:170913‑M2/95‑76 (MQ=255)                                                                                                                                                      |                                                                                                                                              CTTGCCAACCTGCAGGCGCGTCTGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCAACCGGCGGCGACAGTACGTGACACGTGAT  >  NC_002947/3884277‑3884567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.