New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3884426	14 (0.440)	4 (0.130)	4/238	NT	20.8%	coding (267/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase
	?	NC_002947	= 3884442	17 (0.560)					coding (283/1617 nt)	PP_3429	two component system response regulator/sensor histidine kinase

TGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCAACCGGCGGCGACAGTACGTGACACGTGATCAACTCCATGGC  >  NC_002947/3884299‑3884579                                                                                                                                                |                                                                                                                                          tGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTgggg                                                                                                                                     >  2:296823/1‑150 (MQ=255)    ccGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGctggcggtg                                                                                                                                  >  2:126118‑M2/1‑141 (MQ=255)                     gCGATCATTGCCTAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTggg                                                                                                                  <  1:770855/149‑1 (MQ=255)                     gCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTggg                                                                                                                  >  2:770855/1‑149 (MQ=255)                              gCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTtctc                                                                                                        <  1:296823/150‑1 (MQ=255)                                cGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTctg                                                                                                      >  2:211297/1‑150 (MQ=255)                                  aGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTctggc                                                                                                    >  1:737995/1‑150 (MQ=255)                                                 aaGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACg                                                                                     >  1:503574/1‑150 (MQ=255)                                                                 gctgcAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTtgct                                                                     <  2:691267/150‑1 (MQ=255)                                                                 gctgcAGGCATTCATCGACCAGCAACCGAGCTGGACGGACTGGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTtgct                                                                     <  1:262298/150‑1 (MQ=255)                                                                                           cGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCa                                           >  1:852706/1‑150 (MQ=255)                                                                                                  gTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAAtcttct                                                                                                         <  2:408498/81‑1 (MQ=255)                                                                                                  gTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAAtcttct                                                                                                         >  1:408498/1‑81 (MQ=255)                                                                                                   tCGGATTTGCACATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCAACcggcgg                                   >  2:122000/1‑150 (MQ=255)                                                                                                              cATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGctgggtcagcagcacgatgggcaaatccgaccagctcggttgctggtcgatgaatgcct                                                                                >  2:102296‑M2/1‑35 (MQ=255)                                                                                                              cATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGctgggtcagcagcacgatgggcaaatccgaccagctcggttgctggtcgatgaatgcct                                                                                <  1:102296‑M2/94‑60 (MQ=255)                                                                                                                       gctgACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCACCCGGCGTCCACAGTACTTGACACGTGa               <  2:503574/150‑1 (MQ=255)                                                                                                                             ccAGGGCGCCTGGTCGGCCGctgggtcagcagcacgatgggcaaatccgaccagctcggttgctggtcgatgaatgcctgcagcaaagtgcttgg                                                                <  1:170913‑M2/95‑76 (MQ=255)                                                                                                                             ccAGGGCGCCTGGTCGGCCGctgggtcagcagcacgatgggcaaatccgaccagctcggttgctggtcgatgaatgcctgcagcaaagtgcttgg                                                                >  2:170913‑M2/1‑20 (MQ=255)                                                                                                                                   cgcCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCAACCGGCGGCGACAGTACGTGACACGTGATCAACTCCATgg   <  2:852706/150‑1 (MQ=255)                                                                                                                                    gcCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCAACCGGCGGCGACAGTACGTGACACGTGATCAACTCCATGGc  >  2:295573/1‑150 (MQ=255)                                                                                                                                         gTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCAACCGGCGGCGa                                <  2:641717/115‑1 (MQ=255)                                                                                                                                         gTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCAACCGGCGGCGa                                >  1:641717/1‑115 (MQ=255)                                                                                                                                                |                                                                                                                                          TGACCGAGGGCGCAGGGTTGGCGATCATTGCCGAGCAGGTGTTCAGCCAAGGCCCAAGCACTTTGCTGCAGGCATTCATCGACCAGCAACCGAGCTGGTCGGATTTGCCCATCGTGCTGCTGACCCAGGGCGCCTGGTCGGCCGCTGGGGTGAATCATCATCCAGTGGGCAATCTTCTCTGGCTGGTCACGCCCTACGAAAATGCCCAGTTGCTGCACATGACCCAGTCCGCGCTGCGCAACCGGCGGCGACAGTACGTGACACGTGATCAACTCCATGGC  >  NC_002947/3884299‑3884579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.