New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3921849 =	35 (1.110)	3 (0.100)	3/226	NT	9.0%	intergenic (‑40/+100)	acs/peaD	acyl‑CoA synthetase/quinohemoprotein amine dehydrogenase subunit beta
	?	NC_002947	3921936 =	29 (1.010)					intergenic (‑127/+13)	acs/peaD	acyl‑CoA synthetase/quinohemoprotein amine dehydrogenase subunit beta

AAGTTGCCGGGTGGTGACATGTCTACCACGACGCCGCAGGTGTTCGTTCGCTAAACCGGTGTGTGCTTCTTCGCGGGTAAACCCGCGCCGACGAAAACCTCCACAGGCCCCAAATGTGGCGCCTCCTGTGTAGGAGCGGGTTCACCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3922002‑3921849 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagaAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACACCGCCAGGTCGTTGAAGGTGCCGCCCAGGTAAAGCTTGTCGCC  >  NC_002947/3921936‑3922083                                                                                                                                                                                                                                                                                                                AAGTTGCCGGGTGGTGACATGTCTACCACGACGCCGCAGGTGTTCGTTCGCTAAACCGGTGTGTGCTTCTTCGCGGGTAAACCCGCGCCGACGAAAACCTCCACAGGCCCCAAATGTTGCGCCTCCTGTGTAGGAGCGGGTTCACCCGCG                                                                                                                                                          >  2:415163/1‑150   GTTGCCGGGTGGTGACATGTCTACCACGACGCCGCAGGTGTTCGTTCGCTAAACCGGTGTGTGCTTCTTCGCGGGTAAACCCGCGCCGACGAAAACCTCCACAGGCCCCAAATGTGGCGCCTCCTGTGTAGGAGCGGGTTCACCCGCGAA                                                                                                                                                        <  1:306290/150‑1   GTTGCCGGGTGGTGACATGTCTACCACGACGCCGCAGGTGTTCGTTCGCTAAACCGGTGTGTGCTTCTTCGCGGGTAAACCCGCGCCGACGAAAACCTCCACAGGCCCCAAATGTGGCGCCTCCTGTGTAGGAGCGGGTTCACCCGCGAA                                                                                                                                                        <  1:78535/150‑1                                                                                  CCCGCGCCGACGAAAACCTCCACAGGCCCCAAATGTGGCGCCTCCTGTGTAGGAGCGGGTTCACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTC                                                                         >  2:797172/1‑150                                                                                   CCGCGCCGACGAAAACCTCCACAGGCCCCAAATGTGGCGCCTCCTGTGTAGGAGCGGGTTCACCCGCGAAGAAGCAGGATGCCGTGCATCTAACTAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCA                                                                        >  1:656527/1‑150                                                                                                         AGGCCCCAAATGTGGCGCCTCCTGTGTAGGAGCGGGTTCACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTT                                                  <  1:797172/150‑1                                                                                                                                         cgggtaaACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACACCGCCAGGTCGTTGAAGGTGCCGCCCA                  >  2:631707/8‑150                                                                                                                                                         GAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACACCGCCAGGTCGTTGAAGGTGCCGCCCAGGTAAAGCTTGTCGCC  <  2:656527/150‑1                                                                                                                                                                                                                                                                                                                AAGTTGCCGGGTGGTGACATGTCTACCACGACGCCGCAGGTGTTCGTTCGCTAAACCGGTGTGTGCTTCTTCGCGGGTAAACCCGCGCCGACGAAAACCTCCACAGGCCCCAAATGTGGCGCCTCCTGTGTAGGAGCGGGTTCACCCGCGAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3922002‑3921849 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaagaAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACACCGCCAGGTCGTTGAAGGTGCCGCCCAGGTAAAGCTTGTCGCC  >  NC_002947/3921936‑3922083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.