New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3921849 =	35 (1.110)	3 (0.100)	3/226	NT	9.0%	intergenic (‑40/+100)	acs/peaD	acyl‑CoA synthetase/quinohemoprotein amine dehydrogenase subunit beta
	?	NC_002947	3921936 =	29 (1.010)					intergenic (‑127/+13)	acs/peaD	acyl‑CoA synthetase/quinohemoprotein amine dehydrogenase subunit beta

GTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACACCGCCAGGTCGTTGAAGGTGCCGCCCAGGTAAAGCTTGTCGCC  >  NC_002947/3921790‑3922083                                                                                                                                                   |                                                                                                                                                    gtgtAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGca                                                                                                                                                  <  2:808861/150‑1 (MQ=255)      gCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCacacac                                                                                                                                             <  2:321476/150‑1 (MQ=255)        ttGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCg                                                                                                                                           <  1:114431/150‑1 (MQ=255)                   aTGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGcgaac                                                                                                                                <  2:652256/150‑1 (MQ=255)                   aTGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGcgaac                                                                                                                                <  1:147446/150‑1 (MQ=255)                               ttGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTgcgg                                                                                                                    >  2:655346/1‑150 (MQ=255)                                         tgtgTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTa                                                                                                          <  1:655346/150‑1 (MQ=255)                                           tgtTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGa                                                                                                        <  1:603851/150‑1 (MQ=255)                                                 cTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTc                                                                                                  <  1:743717/150‑1 (MQ=255)                                                       tGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTTTCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCaccacc                                                                                            >  1:397310/1‑150 (MQ=255)                                                       tGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCaccacc                                                                                            >  2:212337/1‑150 (MQ=255)                                                              TTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAAc                                                                                     <  1:306290‑M1/150‑1 (MQ=255)                                                              TTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAAc                                                                                     <  1:78535‑M1/150‑1 (MQ=255)                                                                CGCGGGTGAACCCGCTCCTACACAGGAGGCGCAACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACtt                                                                                   >  2:415163‑M1/1‑150 (MQ=255)                                                                       gAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGttc                                                                            <  2:541105/150‑1 (MQ=255)                                                                          cccgcgccgacgaaaacctccacaggccccaaatgtggcgcctcctgtgtaggagcgggttcacccgcgaagaAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGttcttc                                                                         >  2:797172‑M2/74‑150 (MQ=255)                                                                           ccgcgccgacgaaaacctccacaggccccaaatgtggcgcctcctgtgtaggagcgggttcacccgcgaagaAGCAGGATGCCGTGCATCTAACTAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCa                                                                        >  1:656527‑M2/73‑150 (MQ=255)                                                                           ccGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCa                                                                        >  2:126189/1‑150 (MQ=255)                                                                               tCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACtt                                                                                   <  1:536929/135‑1 (MQ=255)                                                                               tCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACtt                                                                                   >  2:536929/1‑135 (MQ=255)                                                                                    cacaGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGCATAAAAGCGACGAAGCACACACCGGTTTAGCGAACGAACACCTTCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCa                                                               <  2:313159/150‑1 (MQ=255)                                                                                      caGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGc                                                             <  2:78535/150‑1 (MQ=255)                                                                                       aggaggCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCg                                                            >  1:340297/1‑150 (MQ=255)                                                                                                cacaTTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGt                                                                                                   >  2:833413/1‑102 (MQ=255)                                                                                                cacaTTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGt                                                                                                   <  1:833413/102‑1 (MQ=255)                                                                                                 aggccccaaatgtggcgcctcctgtgtaggagcgggttcacccgcgaagaAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGtt                                                  <  1:797172‑M2/100‑1 (MQ=255)                                                                                                   aTTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGa                                                >  1:645377/1‑150 (MQ=255)                                                                                                        gggCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACAcc                                           <  2:149809/150‑1 (MQ=255)                                                                                                        gggCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACAcc                                           <  1:126189/150‑1 (MQ=255)                                                                                                             tgtgGATTTTTGCGGCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACACCGCCAg                                      <  2:93073/150‑1 (MQ=255)                                                                                                               tgGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGAt                                                                                >  2:586757/1‑106 (MQ=255)                                                                                                               tgGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGAt                                                                                <  1:586757/106‑1 (MQ=255)                                                                                                                      tttCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACACCGCCAGGTCGTTGaa                             <  1:212337/150‑1 (MQ=255)                                                                                                                          gtcgGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACACCGCCAg                                      <  1:830052/137‑1 (MQ=255)                                                                                                                          gtcgGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACACCGCCAg                                      >  2:830052/1‑137 (MQ=255)                                                                                                                             ttcgcgGGTAAACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACACCGCCAGGTCGTTGAAGGTgccg                      >  2:467055/3‑150 (MQ=255)                                                                                                                                 cgggtaaacccgcgaagaAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACACCGCCAGGTCGTTGAAGGTGCCGCCCa                  >  2:631707‑M2/19‑150 (MQ=255)                                                                                                                                    gTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCtttt                                                                  <  2:122531/99‑1 (MQ=255)                                                                                                                                    gTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCtttt                                                                  >  1:122531/1‑99 (MQ=255)                                                                                                                                                 gaAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACACCGCCAGGTCGTTGAAGGTGCCGCCCAGGTAAAGCTTGTCGcc  <  2:656527‑M2/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACCCGGCAACTTGATGTTCTTCACCTTTTCCAGCGTATCCGGGTTGAACACCGCCAGGTCGTTGAAGGTGCCGCCCAGGTAAAGCTTGTCGCC  >  NC_002947/3921790‑3922083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.