New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3921849 =	35 (1.110)	3 (0.100)	3/226	NT	9.0%	intergenic (‑40/+100)	acs/peaD	acyl‑CoA synthetase/quinohemoprotein amine dehydrogenase subunit beta
	?	NC_002947	3921936 =	29 (1.010)					intergenic (‑127/+13)	acs/peaD	acyl‑CoA synthetase/quinohemoprotein amine dehydrogenase subunit beta

GCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACC  >  NC_002947/3921701‑3921993                                                                                                                                                     |                                                                                                                                                 ggcgacaagctttacctgggcggcaccttcaacgacctggcggtgttcaacccggatacgctggaaaaggtgaagaacatcaagttgccgggtggtgacatgtctaccacgacgccgcaggtgttcgttcgctaaaccggtgtgtgcttc                                                                                                                                                 <  2:656527‑M1/2‑1 (MQ=255)     cTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTcg                                                                                                                                             >  1:652256/1‑150 (MQ=255)        aCGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCgg                                                                                                                                          <  1:282741/150‑1 (MQ=255)               gggAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAAcc                                                                                                                                   >  1:321476/1‑150 (MQ=255)                 tgggcggcaccttcaacgacctggcggtgttcaacccggatacgctggaaaaggtgaagaacatcaagttgccgggtggtgacatgtctaccacgacgccgcaggtgttcgttcgctaaaccggtgtgtgctTCTtcgcgggtttacccg                                                                                                                                 >  2:631707‑M1/133‑143 (MQ=255)                 gAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCg                                                                                                                                 >  1:808861/1‑150 (MQ=255)                  aaGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGc                                                                                                                                >  2:379998/1‑150 (MQ=255)                                    tCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGcc                                                                                                              >  2:247676/1‑150 (MQ=255)                                      gAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCCCcaa                                                                                                            >  1:290233/1‑149 (MQ=255)                                            gTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTgg                                                                                                      >  2:147446/1‑150 (MQ=255)                                               gCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGTCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACag                                                                                                                      >  1:196249/1‑131 (MQ=255)                                               gCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACag                                                                                                                      <  2:196249/131‑1 (MQ=255)                                               gCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGc                                                                                                   >  1:313159/1‑150 (MQ=255)                                                 aacccggatacgctggaaaaggtgaagaacatcaagttgccgggtggtgacatgtctaccacgacgccgcaggtgttcgttcgctaaaccggtgtgtgctTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCt                                                                                                 <  1:797172‑M1/50‑1 (MQ=255)                                                       aTTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAg                                                                                           >  2:676935/1‑150 (MQ=255)                                                        ttGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAgg                                                                                          <  1:379998/150‑1 (MQ=255)                                                             tCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTtc                                                                                     <  1:296057/150‑1 (MQ=255)                                                                gcagGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTcgc                                                                                                                                            >  1:98303/1‑92 (MQ=255)                                                                gcagGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTtcgtc                                                                                  <  1:247676/150‑1 (MQ=255)                                                                gcagGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCGGTTCTTGTGTTTTCTGTGCTGGCCTCTTcgc                                                                                                                                            <  2:98303/92‑1 (MQ=255)                                                                 cagGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTtcgtcg                                                                                 >  1:415163/1‑150 (MQ=255)                                                                       tgaagaacatcaagttgccgggtggtgacatgtctaccacgacgccgcaggtgttagttagatgcacggcatcctgctTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCgg                                                                           >  1:656527‑M1/79‑150 (MQ=255)                                                                       cTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCgg                                                                           <  1:676935/150‑1 (MQ=255)                                                                        ttGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTtc                                                                                     <  2:511571/139‑1 (MQ=255)                                                                        ttGTCCTGGGTGCCCTGGGGGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTtc                                                                                     >  1:511571/1‑139 (MQ=255)                                                                        gaagaacatcaagttgccgggtggtgacatgtctaccacgacgccgcaggtgttcgttcgctaaaccggtgtgtgctTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCggg                                                                          >  2:797172‑M1/78‑150 (MQ=255)                                                                                      cTGGGTGTAGCTTGGCTGGGGCATGGGCGTTATATTGATGCAAATGTGCTTGCGGTTCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCgaaga                                                            >  1:149809/1‑150 (MQ=255)                                                                                          gtgtAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGca                                                        <  2:808861/150‑1 (MQ=255)                                                                                               gCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTcc                                                                                                                             >  2:660299/1‑76 (MQ=255)                                                                                               gCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTcc                                                                                                                             <  1:660299/76‑1 (MQ=255)                                                                                               gCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCacacac                                                   <  2:321476/150‑1 (MQ=255)                                                                                                 ttGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCg                                                 <  1:114431/150‑1 (MQ=255)                                                                                                            aTGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGcgaac                                      <  1:147446/150‑1 (MQ=255)                                                                                                            aTGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGcgaac                                      <  2:652256/150‑1 (MQ=255)                                                                                                                        ttGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTgcgg                          >  2:655346/1‑150 (MQ=255)                                                                                                                                 ttGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCgaa                                                              >  2:565639/1‑105 (MQ=255)                                                                                                                                 ttGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCgaa                                                              <  1:565639/105‑1 (MQ=255)                                                                                                                                  tgtgTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTa                <  1:655346/150‑1 (MQ=255)                                                                                                                                    tgtTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGa              <  1:603851/150‑1 (MQ=255)                                                                                                                                          cTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTc        <  1:743717/150‑1 (MQ=255)                                                                                                                                                tGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTTTCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCaccacc  >  1:397310/1‑150 (MQ=255)                                                                                                                                                tGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCaccacc  >  2:212337/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GCGCCTCACGGTCGGGGAAGCGGGCTACGGTGGCGTCGAAGGCGTCGCCGATGCATTGGGTCAGCAGGGGCTTGTCCTGGGTGCCCTGGGTGTAGCTTGGCTGGGGCATGGGCGTTCTCTTGCTGTTCTTGTGTTTTCTGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACACAGGAGGCGCCACATTTGGGGCCTGTGGAGGTTTTCGTCGGCGCGGGTTTACCCGCGAAGAAGCACACACCGGTTTAGCGAACGAACACCTGCGGCGTCGTGGTAGACATGTCACCACC  >  NC_002947/3921701‑3921993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.