New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3950580	51 (1.610)	4 (0.130)	4/234	NT	7.3%	coding (501/1491 nt)	PP_3486	cytochrome c
	?	NC_002947	= 3950602	53 (1.770)					coding (479/1491 nt)	PP_3486	cytochrome c

CTTTTGCTCGAGCAACTGTTGCAAGGCGCGTTCGGCACTGACCGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3950427‑3950580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcccgCGAGCGGTCCGCTGGCCGAAGCCGGGCAGGTGGTGCGTGCCGTGCTGGAA  <  NC_002947/3950602‑3950553                                                                                                                                                                                                              CTTTTGCTCGAGCAACTGTTGCAAGGCGCGTTCGGCACTGACCGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTG                                                        >  2:373900/1‑150                                     cCTGACCGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCTTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGCGAGCGGTCCGCTGGCCGAAGCCGGGCAGGTG                    <  1:715937/149‑1                                          CCGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACG‑‑‑CTGCTGCCCGCGAGCGGTCCGCTGGCCGAAGCCGGGCAGGTGGTGCGTGC            <  1:48738/150‑1                                                                                                                     CCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGCGAGCGGTCCGCTGGCCGAAGCCGGGCAGGTGG                   >  1:242030/1‑71                                                                                                                     CCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGCGAGCGGTCCGCTGGCCGAAGCCGGGCAGGTGG                   <  2:242030/71‑1                                                                                                                                                     TGCCCGCGAGCGGTCCGCTGGCCGAAGCCGGGCAGGTGGTGCGTGCCGTGCTGGAA  >  1:6649/1‑56                                                                                                                                                     TGCCCGCGAGCGGTCCGCTGGCCGAAGCCGGGCAGGTGGTGCGTGCCGTGCTGGAA  <  2:6649/56‑1                                                                                                                                                                                                              CTTTTGCTCGAGCAACTGTTGCAAGGCGCGTTCGGCACTGACCGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3950427‑3950580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcccgCGAGCGGTCCGCTGGCCGAAGCCGGGCAGGTGGTGCGTGCCGTGCTGGAA  <  NC_002947/3950602‑3950553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.