New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3950580	51 (1.610)	4 (0.130)	4/234	NT	7.3%	coding (501/1491 nt)	PP_3486	cytochrome c
	?	NC_002947	= 3950602	53 (1.770)					coding (479/1491 nt)	PP_3486	cytochrome c

ACCGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTGGCATGGCCGGGTCGAGGCGATT  >  NC_002947/3950467‑3950744                                                                                                                                        |                                                                                                                                                aCCGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTg                                                                                                                                   >  1:636162/1‑150 (MQ=255) aCCGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCAGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTg                                                                                                                                   >  2:163134/1‑150 (MQ=255)   cGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGcc                                                                                                                                 >  2:228380/1‑150 (MQ=255)   cGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGAACGCACCGCCTGCCCTCCTACGGCCAGCGGGCCTCTCGCGGGCAGCAGCGTGcc                                                                                                                                 >  2:684292/1‑150 (MQ=255)          gAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGgcg‑c                                                                                                                         <  1:592582/150‑1 (MQ=255)           aaCCTGGCTGGAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCg‑ca                                                                                                                        <  1:36309/150‑1 (MQ=255)             ccTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGCGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCg‑cagc                                                                                                                      >  2:195543/1‑150 (MQ=255)                gggTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGgcg‑c                                                                                                                         >  2:377106/1‑144 (MQ=255)                gggTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGgcg‑c                                                                                                                         <  1:377106/144‑1 (MQ=255)                       gTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCcctcct                                                                                                            >  2:257908/1‑150 (MQ=255)                          cGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCca                                                                                                         <  2:167723/150‑1 (MQ=255)                                gTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAg                                                                                                   <  1:257908/150‑1 (MQ=255)                                 ttCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAgg                                                                                                  <  2:456052/150‑1 (MQ=255)                                    cAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTc                                                                                               >  1:293405/1‑150 (MQ=255)                                              ccGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGgc                                                                                                                            >  2:190916/1‑112 (MQ=255)                                              ccGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGgc                                                                                                                            <  1:190916/112‑1 (MQ=255)                                                     tGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGc                                                                              >  1:754596/1‑150 (MQ=255)                                                     tGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGc                                                                              >  1:63313/1‑150 (MQ=255)                                                         gccTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGttt                                                                          <  1:539815/150‑1 (MQ=255)                                                         gccTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGttt                                                                          <  2:63313/150‑1 (MQ=255)                                                           cTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTga                                                                        >  1:565928/1‑150 (MQ=255)                                                                  gttgagttgaCCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAgg                                                                                                  <  1:114065/117‑1 (MQ=255)                                                                  gttgagttgaCCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAgg                                                                                                  >  2:114065/1‑117 (MQ=255)                                                                    tgagttgaCCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCgg                                                               <  1:125424/150‑1 (MQ=255)                                                                           aCCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGttt                                                                          <  2:4704/132‑1 (MQ=255)                                                                           aCCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGttt                                                                          >  1:4704/1‑132 (MQ=255)                                                                           aCCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGtt                                                        <  2:293405/150‑1 (MQ=255)                                                                             ccAAGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTgc                                                      >  2:364498/1‑150 (MQ=255)                                                                               aCGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGc                                                                                   <  2:827575/119‑1 (MQ=255)                                                                               aCGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGc                                                                                   >  1:827575/1‑119 (MQ=255)                                                                               aCGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTgcgc                                                    <  2:636162/150‑1 (MQ=255)                                                                                cGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGATCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGtt                                                                           >  2:636820/1‑126 (MQ=255)                                                                                cGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGATCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGtt                                                                           <  1:636820/126‑1 (MQ=255)                                                                                       ttCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGcgggca                                                                                                                                           <  2:6649‑M2/56‑7 (MQ=255)                                                                                       ttCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGcgggca                                                                                                                                           >  1:6649‑M2/1‑50 (MQ=255)                                                                                           aGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGt                                                                            >  2:145609/1‑114 (MQ=255)                                                                                           aGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGt                                                                            <  1:145609/114‑1 (MQ=255)                                                                                           aGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAg                                        <  2:565928/150‑1 (MQ=255)                                                                                             cacggcacgCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGt                                      <  1:655355/150‑1 (MQ=255)                                                                                                ggcacgCACCACCTGCCCTGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAg                                   <  2:351460/150‑1 (MQ=255)                                                                                                 gcacgcacCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGcgggcagcagcgtgccgtgctggaagacggcgtgggtcaactcaaccagcaaggcggcattcacgggcggcgcctggaactggtcgtactagacccaggttccgacccgg                                   <  1:48738‑M2/150‑111 (MQ=255)                                                                                                  cacgcacCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAg                                                           >  1:606103/1‑124 (MQ=255)                                                                                                  cacgcacCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAg                                                           <  2:606103/124‑1 (MQ=255)                                                                                                      caccacCTGCCCAGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGaa                             <  1:163134/150‑1 (MQ=255)                                                                                                       accaccTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAg                            <  1:10295/150‑1 (MQ=255)                                                                                                        ccaccTGCCCGGCTTCGGCCAGCGGACCGCTCGcgggcaggtggtgcgtgccgtgctggaagacggcgtgg                                                                                                           <  2:242030‑M2/71‑39 (MQ=255)                                                                                                        ccaccTGCCCGGCTTCGGCCAGCGGACCGCTCGcgggcaggtggtgcgtgccgtgctggaagacggcgtgg                                                                                                           >  1:242030‑M2/1‑33 (MQ=255)                                                                                                         caccTGCCCGGCTTCGGCCAGCGGACCGCTCGcgggcaggtggtgcgtgccgtgctggaagacggcgtgggtcaactcaaccagcaaagcggcattcacgggcggcgcctggaactggtcgtactagacccaggttccgacccggtcagg                           <  1:715937‑M2/150‑119 (MQ=255)                                                                                                         caccTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCa                                                                                                    <  2:462895/76‑1 (MQ=255)                                                                                                         caccTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCa                                                                                                    >  1:462895/1‑76 (MQ=255)                                                                                                            cTGCCCGGCTTCTGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCGCCAACGCTACCGCGAGTGC‑CCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTgg                       <  1:195543/150‑1 (MQ=255)                                                                                                               cccGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTGGCAt                    >  2:205036/1‑150 (MQ=255)                                                                                                                  ggCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTGGCATGGc                 >  1:175505/1‑150 (MQ=255)                                                                                                                         gCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCtcctcc                                                                                                          <  2:355141/54‑1 (MQ=255)                                                                                                                         gCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCtcctcc                                                                                                          >  1:355141/1‑54 (MQ=255)                                                                                                                         gCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTGGCATGGCCGGGTCg          >  2:137163/1‑150 (MQ=255)                                                                                                                         gCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTGGCATGGCCGGGTCg          >  2:300277/1‑150 (MQ=255)                                                                                                                               ggACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTGGCATGGCCGGGTCGAGGCGa    <  1:300277/150‑1 (MQ=255)                                                                                                                                 aCCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTGGCATGGCCGGGTCGAGGCGAtt  <  1:396350/150‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                ACCGGGTCGGAACCTGGGTCTAGTACGACCAGTTCCAGGCGCCGCCCGTGAATGCCGCCTTGCTGGTTGAGTTGACCCACGCCGTCTTCCAGCACGGCACGCACCACCTGCCCGGCTTCGGCCAGCGGACCGCTCGCGGGCAGCAGCGTGCCAAGGCG‑CAGCACGCCCTCCTCCACACCAGGGTCGCGTTCATCGGCCAAGCGTTTGAGATAGGCGGTGAGGTTGCGCTGGTCGGCCAAGGTCAGTTCGAAGCGTGGCATGGCCGGGTCGAGGCGATT  >  NC_002947/3950467‑3950744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.