New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4127342 = | 23 (0.730) | 4 (0.140) | 4/232 | NT | 15.8% | coding (63/1344 nt) | opdT‑II | tyrosine‑specific outer membrane porin D |
? | NC_002947 | 4127381 = | 21 (0.710) | coding (24/1344 nt) | opdT‑II | tyrosine‑specific outer membrane porin D |
GTGCAGATCACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4127399‑4127342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccagTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGG > NC_002947/4127381‑4127478 GTGCAGATCACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACG > 2:659208/1‑150 ATCACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGG < 1:659208/150‑1 TGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCA < 1:327590/123‑1 TGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCA > 2:327590/1‑123 GCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGC < 1:639878/92‑1 GCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGC > 2:639878/1‑92 GTGCAGATCACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4127399‑4127342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccagTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGG > NC_002947/4127381‑4127478 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |