New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4127342 =	23 (0.730)	4 (0.140)	4/232	NT	15.8%	coding (63/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D
	?	NC_002947	4127381 =	21 (0.710)					coding (24/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D

GGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAATTGCG  >  NC_002947/4127234‑4127500                                                                                                                                                    |                                                                                                                        gggggCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAgtgt                                                                                                                       <  2:555845/150‑1 (MQ=255)  ggggCCACAGAATCGCGATTATCGCGATTGAAGAAGAAGTTGCGGTTAAGCACGCTGAGGTTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTc                                                                                                                      >  1:495791/1‑150 (MQ=255)       cacaGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAgggg                                                                                                                 >  2:529751/1‑150 (MQ=255)           gAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGAt                                                                                                             <  1:529751/150‑1 (MQ=255)           ccttggcgttatctgccggccgtcaatcttggcccgccgacataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGAt                                                                                                             <  1:659208‑M1/52‑1 (MQ=255)                 cgttatctgccggccgtcaatcttggcccgccgacataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCAc                                                                                                       >  2:659208‑M1/93‑150 (MQ=255)                             ttGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGTCGCGGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGc                                                                                           <  2:495791/150‑1 (MQ=255)                                         ttGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTc                                                                               >  1:737765/1‑150 (MQ=255)                                               ttAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCAttt                                                                         <  2:100544/150‑1 (MQ=255)                                                tAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATttg                                                                        <  1:172664/150‑1 (MQ=255)                                                tAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATctg                                                                        <  1:851901/150‑1 (MQ=255)                                                  aGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATttgtt                                                                      <  1:297015/150‑1 (MQ=255)                                                   gCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATttgttg                                                                     >  2:823419/1‑150 (MQ=255)                                                      cGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTa                                                                  >  1:664531/1‑150 (MQ=255)                                                                             aaGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGAcgg                                           >  1:404338/1‑150 (MQ=255)                                                                                ccGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGAcggccg                                        >  1:599567/1‑150 (MQ=255)                                                                                     cGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCa                                     >  2:49157/1‑148 (MQ=255)                                                                                     cGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCa                                     <  1:49157/148‑1 (MQ=255)                                                                                      gCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGAt                                  <  2:599567/150‑1 (MQ=255)                                                                                          gtgcagatcacccctgacactggctgcttgcctggcgctggccggcgttggcagccagTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACg                              >  2:659208‑M2/59‑150 (MQ=255)                                                                                               tCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCCTACGATGCTCCTTCTATCGCGCATTTGTTGTTATTTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAg                         <  1:744645/150‑1 (MQ=255)                                                                                                atcacccctgacactggctgcttgcctggcgctggccggcgttggcagccagTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAgg                        <  1:659208‑M2/98‑1 (MQ=255)                                                                                                   cagcaACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACg                                                                                                      >  1:216842/1‑69 (MQ=255)                                                                                                   cagcaACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACg                                                                                                      <  2:216842/69‑1 (MQ=255)                                                                                                    agcaACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGAt                    <  2:404338/150‑1 (MQ=255)                                                                                                              tggctgcttgcctggcgctggccggcgttggcagccagTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCa                                     >  2:327590‑M2/39‑123 (MQ=255)                                                                                                              tggctgcttgcctggcgctggccggcgttggcagccagTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCa                                     <  1:327590‑M2/85‑1 (MQ=255)                                                                                                                      accGCCGGCCATCGCGAGGCAAACAGCCAGTGGTAGGGGTGATCTGCACGTCATCCGATTCTCATTGAACGTCGCATTTGTTGTTATGTATGCGGGCCAAGATTTAGGGCCGGCAGATTACGCCAAGGGGATCGGCGCATTAGAATTGCg  >  2:319208/3‑150 (MQ=255)                                                                                                                      aaCGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAATTGCg  <  1:823419/150‑1 (MQ=255)                                                                                                                                            gcagccagTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGAcggccggc                                      >  2:639878‑M2/9‑92 (MQ=255)                                                                                                                                            gcagccagTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGAcggccggc                                      <  1:639878‑M2/84‑1 (MQ=255)                                                                                                                                                    |                                                                                                                        GGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAATTGCG  >  NC_002947/4127234‑4127500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.