New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4127342 =	23 (0.730)	4 (0.140)	4/232	NT	15.8%	coding (63/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D
	?	NC_002947	4127381 =	21 (0.710)					coding (24/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D

TCGGAGTAGCCGTTGTCAGCTTGTTTGCTCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGAT  >  NC_002947/4127193‑4127482                                                                                                                                                      |                                                                                                                                             tCGGAGTAGCCGTTGTCAGCTTGTTTGCTCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAAcc                                                                                                                                              >  2:744645/1‑150 (MQ=255)                          tGCTCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCa                                                                                                                     >  1:702350/1‑150 (MQ=255)                                      gtgtgGGGGCCACAGAATCGCGATTATCGCGATTGAAGAAAAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCa                                                                                                         <  1:567142/150‑1 (MQ=255)                                          gggggCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAgtgt                                                                                                     <  2:555845/150‑1 (MQ=255)                                           ggggCCACAGAATCGCGATTATCGCGATTGAAGAAGAAGTTGCGGTTAAGCACGCTGAGGTTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTc                                                                                                    >  1:495791/1‑150 (MQ=255)                                                cacaGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAgggg                                                                                               >  2:529751/1‑150 (MQ=255)                                                    gAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGAt                                                                                           <  1:529751/150‑1 (MQ=255)                                                    ccttggcgttatctgccggccgtcaatcttggcccgccgacataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGAt                                                                                           <  1:659208‑M1/52‑1 (MQ=255)                                                          cgttatctgccggccgtcaatcttggcccgccgacataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCAc                                                                                     >  2:659208‑M1/93‑150 (MQ=255)                                                                 tgccggccgtcaatcttggcccgccgacataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCa                                                                                                         <  1:327590‑M1/38‑1 (MQ=255)                                                                 tgccggccgtcaatcttggcccgccgacataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCa                                                                                                         >  2:327590‑M1/86‑123 (MQ=255)                                                                  gccggccgtcaatcttggcccgccgacataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCTGGCTGc                                                                                                                                       >  2:639878‑M1/85‑92 (MQ=255)                                                                  gccggccgtcaatcttggcccgccgacataacaacaaatgcgacgttcaaggagcatcggatgacgtgcagatcacccctgacaCTGGCTGc                                                                                                                                       <  1:639878‑M1/8‑1 (MQ=255)                                                                      ttGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGTCGCGGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGc                                                                         <  2:495791/150‑1 (MQ=255)                                                                                  ttGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTc                                                             >  1:737765/1‑150 (MQ=255)                                                                                        ttAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCAttt                                                       <  2:100544/150‑1 (MQ=255)                                                                                         tAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATttg                                                      <  1:172664/150‑1 (MQ=255)                                                                                         tAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATctg                                                      <  1:851901/150‑1 (MQ=255)                                                                                           aGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATttgtt                                                    <  1:297015/150‑1 (MQ=255)                                                                                            gCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATttgttg                                                   >  2:823419/1‑150 (MQ=255)                                                                                               cGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTa                                                >  1:664531/1‑150 (MQ=255)                                                                                                                      aaGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGAcgg                         >  1:404338/1‑150 (MQ=255)                                                                                                                         ccGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGAcggccg                      >  1:599567/1‑150 (MQ=255)                                                                                                                              cGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCa                   <  1:49157/148‑1 (MQ=255)                                                                                                                              cGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCa                   >  2:49157/1‑148 (MQ=255)                                                                                                                               gCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGAt                <  2:599567/150‑1 (MQ=255)                                                                                                                                        tCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCCTACGATGCTCCTTCTATCGCGCATTTGTTGTTATTTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAg       <  1:744645/150‑1 (MQ=255)                                                                                                                                            cagcaACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACg                                                                                    <  2:216842/69‑1 (MQ=255)                                                                                                                                            cagcaACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACg                                                                                    >  1:216842/1‑69 (MQ=255)                                                                                                                                             agcaACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGAt  <  2:404338/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                             TCGGAGTAGCCGTTGTCAGCTTGTTTGCTCGGGTTGTGTGTGGGGGCCACAGAATCGCGATTATCGCGATTGAAGTAGAAGTTGCGGTTAAGCACGCTGAGGGTGCTGCCCTCCATGAAGCCGTCCGCACTTTTTTCTGCAGCAACAACCTGGCTGCCAACGCCGGCCAGCGCCAGGCAAGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGAT  >  NC_002947/4127193‑4127482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.