New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4141033 =	33 (1.040)	6 (0.200)	6/238	NT	14.5%	intergenic (+20/‑49)	PP_5609/PP_3645	hypothetical protein/L‑proline amide hydrolase
	?	NC_002947	4141061 =	39 (1.280)					intergenic (+48/‑21)	PP_5609/PP_3645	hypothetical protein/L‑proline amide hydrolase

CTTGTTCAGGCCCACGCCGTGGATCAGCACCACGGGTTGGCCCTGGCCGACATCCAGATAGCTGGTGCCGGCAGGTGTGCGTTCAGCGACAGGCTGAATCATGGAGGGCGCTCCTTGAAGGTCGGGCGCGGCG‑GGTAAGCACGCCACGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4141183‑4141033 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAACAAGGAAATGTGGGGCGGTCAGTTCGTT  >  NC_002947/4141061‑4141207                                                                                                                                                                                                                                                                                                             CTTGTTCAGGCCCACGCCGTGGATCAGCACCACGGGTTGGCCCTGGCCGACATCCAGATAGCTGGTGCCGGCAGGTGTGCGTTCAGCGACAGGCTGAATCATGGAGGGCGCTCCTTGAAGGTCGGGCGCGGCG‑GGTAAGCACGCCACGCC                                                                                                                                                      >  2:463561/1‑150                               CACGGGTTGGCCCTGGCCGACATCCAGATAGCTGGTGCCGGCAGGTGTGCGTTCAGCGACAGGCTGAATCATGGAGGGCGCTCCTTGAAGGTCGGGCGTGGCGTGCTTA‑CCCGCCGCGCCCGACCTTCAA                                                                                                                                            >  1:589863/1‑130                               CACGGGTTGGCCCTGGCCGACATCCAGATAGCTGGTGCCGGCAGGTGTGCGTTCAGCGACAGGCTGAATCATGGAGGGCGCTCCTTGAAGGTCGGGCGTGGCGTGCTTA‑CCCGCCGCGCCCGACCTTCAA                                                                                                                                            <  2:589863/130‑1                                                                                                                         GTCGGGCGCGGCG‑GGTAAGCACGCCACGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCA                                                                                        >  1:35052/1‑92                                                                                                                         GTCGGGCGCGGCG‑GGTAAGCACGCCACGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCA                                                                                        <  2:35052/92‑1                                                                                                                              GCGCGGCG‑GGTAAGCACGCCACGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGG                                                                  <  1:673134/109‑1                                                                                                                              GCGCGGCG‑GGTAAGCACGCCACGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGG                                                                  >  2:673134/1‑109                                                                                                                                                      CCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAACAAGGAAATGTGGGGCGGTCAGTTCGTT  <  1:778475/150‑1                                                                                                                                                                                                                                                                                                             CTTGTTCAGGCCCACGCCGTGGATCAGCACCACGGGTTGGCCCTGGCCGACATCCAGATAGCTGGTGCCGGCAGGTGTGCGTTCAGCGACAGGCTGAATCATGGAGGGCGCTCCTTGAAGGTCGGGCGCGGCG‑GGTAAGCACGCCACGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4141183‑4141033 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAACAAGGAAATGTGGGGCGGTCAGTTCGTT  >  NC_002947/4141061‑4141207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.