New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4141033 =	33 (1.040)	6 (0.200)	6/238	NT	14.5%	intergenic (+20/‑49)	PP_5609/PP_3645	hypothetical protein/L‑proline amide hydrolase
	?	NC_002947	4141061 =	39 (1.280)					intergenic (+48/‑21)	PP_5609/PP_3645	hypothetical protein/L‑proline amide hydrolase

ACGCCCCGCGTGCCGATGAAATCGTCGTGGTCCTGGGCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAA  >  NC_002947/4140886‑4141179                                                                                                                                                    |                                                                                                                                                    aacgaactgaccgccccacatttccttgttcaggcccacgccgtggatcagcaccacgggttggccctggccgacatccagatagctggtgccggcaggtgtgcgttcagcgacaggctgaatcatggagggcgctccttgaaggtcggg                                                                                                                                                   <  1:778475‑M1/3‑1 (MQ=255)   gCCCCGCGTGCCGATGAAATCGTCGTGGTCCTGGGCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAGGACGGGCCGGggcg                                                                                                                                                 >  2:111829/1‑150 (MQ=255)   gCCCCGCGTGCCGATGAAATCGTCGTGGTCCTGGGCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGggcg                                                                                                                                                 >  1:259848/1‑150 (MQ=255)       cgcgTGCCGATGAAATCGTCGTGGTCCTGGGCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGggcgtggc                                                                                                                                             <  2:320113/150‑1 (MQ=255)              cGATGAAATCGTCGTGGTCCTGGGCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGCAAACGCCAACGCTCAATAACAACAACCAAGACGCGCCGGGGCGTGGCGTGCTTa                                                                                                                                      >  1:374442/1‑150 (MQ=255)              cGATGAAATCGTCGTGGTCCTGGGCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTa                                                                                                                                      >  1:66354/1‑150 (MQ=255)                    aaTCGTCGTGGTCCTGGGCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACc‑cgcc                                                                                                                               >  2:778475/1‑150 (MQ=255)                           gtGGTCCTGGGCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCg                                                                                                                        >  2:664648/1‑150 (MQ=255)                                   gggCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGATGCCGAAACAGCCAACGCTCAATAACAACAACCAAGACGGGACGGGGCGTGGCGTGCTAACC‑CGCCGCGCCCGACCTTCaa                                                                                                                >  1:264306/1‑150 (MQ=255)                                        cAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAgc                                                                                                           <  2:767861/150‑1 (MQ=255)                                          gCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAgcgc                                                                                                         >  1:27448/1‑150 (MQ=255)                                              aTGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGa                                                                                                             <  1:467687/142‑1 (MQ=255)                                              aTGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGa                                                                                                             >  2:467687/1‑142 (MQ=255)                                                      cgccTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTc                                                                                             <  2:27448/150‑1 (MQ=255)                                                              cccGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAGGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTc                                                                                     <  1:111829/150‑1 (MQ=255)                                                                 ccctggccgacatccagatagctggtgccggcaggtgtgcgttcagcgacaggctgaatcatggagggcgctccttgaaggtcGGGCGTGGCGTGCTTACC‑CGCCgcgc                                                                                                                           >  2:673134‑M1/84‑109 (MQ=255)                                                                 ccctggccgacatccagatagctggtgccggcaggtgtgcgttcagcgacaggctgaatcatggagggcgctccttgaaggtcGGGCGTGGCGTGCTTACC‑CGCCgcgc                                                                                                                           <  1:673134‑M1/26‑1 (MQ=255)                                                                      tCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAgcgc                                                                                                         <  1:463325/122‑1 (MQ=255)                                                                      tCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAgcgc                                                                                                         >  2:463325/1‑122 (MQ=255)                                                                                    aTCGCCCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCa                                                               >  2:259638/1‑150 (MQ=255)                                                                                    aTCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAAc                                                                              <  2:788629/135‑1 (MQ=255)                                                                                    aTCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAAc                                                                              >  1:788629/1‑135 (MQ=255)                                                                                       tggtgccggcaggtgtgcgttcagcgacaggctgaatcatggagggcgctccttgaaggtcGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGAc                                                                                                                      >  1:35052‑M1/62‑92 (MQ=255)                                                                                       tggtgccggcaggtgtgcgttcagcgacaggctgaatcatggagggcgctccttgaaggtcGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGAc                                                                                                                      <  2:35052‑M1/31‑1 (MQ=255)                                                                                           tGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTa                                                        <  1:209854/150‑1 (MQ=255)                                                                                                                    cAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAAccc                               >  2:156975/1‑150 (MQ=255)                                                                                                                     aaCGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCg                              >  2:685864/1‑150 (MQ=255)                                                                                                                      aCGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGa                                                                                                <  1:348377/83‑1 (MQ=255)                                                                                                                      aCGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGa                                                                                                >  2:348377/1‑83 (MQ=255)                                                                                                                       cGCTGAATAACAACAGCCAGGACGGGCCGGGGCGGGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtg                            <  2:264306/150‑1 (MQ=255)                                                                                                                       cGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCt                                                                                  >  1:698151/1‑96 (MQ=255)                                                                                                                       cGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCt                                                                                  <  2:698151/96‑1 (MQ=255)                                                                                                                        tcTCAATAACAACAACCAAGGCGGGCCGGCGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGTACACCTGCTGGTACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtgg                           <  1:532453/149‑1 (MQ=255)                                                                                                                        gCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtgg                           >  1:767094/1‑150 (MQ=255)                                                                                                                          tCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtggtg                         >  1:24641/1‑150 (MQ=255)                                                                                                                            aaTAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtggtaga                       >  2:532453/1‑147 (MQ=255)                                                                                                                                acaacaacCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATc                   >  1:371875/1‑150 (MQ=255)                                                                                                                                      acCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGc             <  1:156975/150‑1 (MQ=255)                                                                                                                                          ttgaaggCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGACCGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCAc                >  1:53468/6‑143 (MQ=255)                                                                                                                                          ttgaaggCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCAc                <  2:53468/138‑1 (MQ=255)                                                                                                                                          aGACGGGCCGGGGCGGGGCGTGCTTACC‑CGCCGCGCTCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAGCCCGTGGTGCTGATCCACGGCGTgg         <  2:232602/150‑1 (MQ=255)                                                                                                                                           ttgaaggtcGGGCGCGGCGGG‑TAAGCACGCCACGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtg                            <  2:589863‑M1/121‑1 (MQ=255)                                                                                                                                           ttgaaggtcGGGCGCGGCGGG‑TAAGCACGCCACGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtg                            >  1:589863‑M1/10‑130 (MQ=255)                                                                                                                                            aCGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGc       <  2:371875/150‑1 (MQ=255)                                                                                                                                                 ccGGGGCGTGGCGTGCTTACC‑CTCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGCCGTGAGCCTGaa  >  2:703330/1‑150 (MQ=255)                                                                                                                                                 ccGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGaa  <  1:259638/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    ACGCCCCGCGTGCCGATGAAATCGTCGTGGTCCTGGGCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAA  >  NC_002947/4140886‑4141179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.