New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4141033 =	33 (1.040)	6 (0.200)	6/238	NT	14.5%	intergenic (+20/‑49)	PP_5609/PP_3645	hypothetical protein/L‑proline amide hydrolase
	?	NC_002947	4141061 =	39 (1.280)					intergenic (+48/‑21)	PP_5609/PP_3645	hypothetical protein/L‑proline amide hydrolase

GTGGTCCTGGGCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAACAAGGAAATGTGGGGCGGTCAGTTCGTT  >  NC_002947/4140912‑4141207                                                                                                                                                       |                                                                                                                                                   gtGGTCCTGGGCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCg                                                                                                                                                    >  2:664648/1‑150 (MQ=255)         gggCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGATGCCGAAACAGCCAACGCTCAATAACAACAACCAAGACGGGACGGGGCGTGGCGTGCTAACC‑CGCCGCGCCCGACCTTCaa                                                                                                                                            >  1:264306/1‑150 (MQ=255)              cAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAgc                                                                                                                                       <  2:767861/150‑1 (MQ=255)                gCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAgcgc                                                                                                                                     >  1:27448/1‑150 (MQ=255)                    aTGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGa                                                                                                                                         >  2:467687/1‑142 (MQ=255)                    aTGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGa                                                                                                                                         <  1:467687/142‑1 (MQ=255)                            cgccTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTc                                                                                                                         <  2:27448/150‑1 (MQ=255)                              cacgggttggccctggccgacatccagatagctggtgccggcaggtgtgcgttcagcgacaggctgaatcatggagggcgctccttgaaggtcgggcgtggcgtgcttacccgccgcgcccGACCTTCaa                                                                                                                                            >  1:589863‑M2/122‑130 (MQ=255)                              cacgggttggccctggccgacatccagatagctggtgccggcaggtgtgcgttcagcgacaggctgaatcatggagggcgctccttgaaggtcgggcgtggcgtgcttacccgccgcgcccGACCTTCaa                                                                                                                                            <  2:589863‑M2/9‑1 (MQ=255)                                    cccGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAGGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTc                                                                                                                 <  1:111829/150‑1 (MQ=255)                                            tCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAgcgc                                                                                                                                     >  2:463325/1‑122 (MQ=255)                                            tCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAgcgc                                                                                                                                     <  1:463325/122‑1 (MQ=255)                                                          aTCGCCCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCa                                                                                           >  2:259638/1‑150 (MQ=255)                                                          aTCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAAc                                                                                                          <  2:788629/135‑1 (MQ=255)                                                          aTCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAAc                                                                                                          >  1:788629/1‑135 (MQ=255)                                                             tggtgccggcaggtgtgcgttcagcgacaggctgaatcatggagggcgctccttgaaggtcGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGAc                                                                                                                                                  >  1:35052‑M1/62‑92 (MQ=255)                                                             tggtgccggcaggtgtgcgttcagcgacaggctgaatcatggagggcgctccttgaaggtcGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGAc                                                                                                                                                  <  2:35052‑M1/31‑1 (MQ=255)                                                                 tGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTa                                                                                    <  1:209854/150‑1 (MQ=255)                                                                                          cAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAAccc                                                           >  2:156975/1‑150 (MQ=255)                                                                                           aaCGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCg                                                          >  2:685864/1‑150 (MQ=255)                                                                                            aCGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGa                                                                                                                            >  2:348377/1‑83 (MQ=255)                                                                                            aCGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGa                                                                                                                            <  1:348377/83‑1 (MQ=255)                                                                                             cGCTGAATAACAACAGCCAGGACGGGCCGGGGCGGGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtg                                                        <  2:264306/150‑1 (MQ=255)                                                                                             cGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCt                                                                                                              >  1:698151/1‑96 (MQ=255)                                                                                             cGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCt                                                                                                              <  2:698151/96‑1 (MQ=255)                                                                                              tcTCAATAACAACAACCAAGGCGGGCCGGCGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGTACACCTGCTGGTACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtgg                                                       <  1:532453/149‑1 (MQ=255)                                                                                              gCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtgg                                                       >  1:767094/1‑150 (MQ=255)                                                                                                tCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtggtg                                                     >  1:24641/1‑150 (MQ=255)                                                                                                  aaTAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtggtaga                                                   >  2:532453/1‑147 (MQ=255)                                                                                                      acaacaacCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATc                                               >  1:371875/1‑150 (MQ=255)                                                                                                            acCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGc                                         <  1:156975/150‑1 (MQ=255)                                                                                                                ttgaaggCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGACCGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCAc                                            >  1:53468/6‑143 (MQ=255)                                                                                                                ttgaaggCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCAc                                            <  2:53468/138‑1 (MQ=255)                                                                                                                aGACGGGCCGGGGCGGGGCGTGCTTACC‑CGCCGCGCTCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAGCCCGTGGTGCTGATCCACGGCGTgg                                     <  2:232602/150‑1 (MQ=255)                                                                                                                 ttgaaggtcGGGCGCGGCGGG‑TAAGCACGCCACGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtg                                                        <  2:589863‑M1/121‑1 (MQ=255)                                                                                                                 ttgaaggtcGGGCGCGGCGGG‑TAAGCACGCCACGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCgtg                                                        >  1:589863‑M1/10‑130 (MQ=255)                                                                                                                  aCGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGc                                   <  2:371875/150‑1 (MQ=255)                                                                                                                       ccGGGGCGTGGCGTGCTTACC‑CTCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGCCGTGAGCCTGaa                              >  2:703330/1‑150 (MQ=255)                                                                                                                       ccGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGaa                              <  1:259638/150‑1 (MQ=255)                                                                                                                        gtcgggcgcggcgggtaagcacgccacgcccGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCa                                                                                        <  2:35052‑M2/61‑1 (MQ=255)                                                                                                                        gtcgggcgcggcgggtaagcacgccacgcccGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCa                                                                                        >  1:35052‑M2/32‑92 (MQ=255)                                                                                                                           GGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAACAAg                          >  2:463561‑M1/1‑150 (MQ=255)                                                                                                                             gcgcggcgggtaagcacgccacgcccGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAggg                                                                  <  1:673134‑M2/83‑1 (MQ=255)                                                                                                                             gcgcggcgggtaagcacgccacgcccGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAggg                                                                  >  2:673134‑M2/27‑109 (MQ=255)                                                                                                                                ggcgtgCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAACAAGGAAAt                     >  1:412021/1‑150 (MQ=255)                                                                                                                                  cgtgCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAACAAGGAAAtgt                   <  2:24641/150‑1 (MQ=255)                                                                                                                                   gtgCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTg                                      >  2:459277/1‑130 (MQ=255)                                                                                                                                   gtgCTTACC‑CCCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTg                                      <  1:459277/130‑1 (MQ=255)                                                                                                                                          cc‑cGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAACAAGGAAATGTGGGGCGGt           <  1:664648/150‑1 (MQ=255)                                                                                                                                           c‑cgccgCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAACAAGGAAATGTGGGGCGGTc          >  1:699133/1‑150 (MQ=255)                                                                                                                                           c‑cgccgCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAACAAGGAAATGTGGGGCGGTc          >  2:78974/1‑150 (MQ=255)                                                                                                                                                 gcgcCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAACAAGGAAATGTGGGGCGGTCAGTTc     <  2:767094/150‑1 (MQ=255)                                                                                                                                                    cccGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAACAAGGAAATGTGGGGCGGTCAGTTCGtt  <  1:778475‑M2/147‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                   GTGGTCCTGGGCGCAGCCGATGGCGGCCGCCTGCACCCGCGCATCGGCAACCGTTACATCGACCTGGAAGAACTGGCTGCCGAAAAAGCCAACGCTCAATAACAACAACCAAGACGGGCCGGGGCGTGGCGTGCTTACC‑CGCCGCGCCCGACCTTCAAGGAGCGCCCTCCATGATTCAGCCTGTCGCTGAACGCACACCTGCCGGCACCAGCTATCTGGATGTCGGCCAGGGCCAACCCGTGGTGCTGATCCACGGCGTGGGCCTGAACAAGGAAATGTGGGGCGGTCAGTTCGTT  >  NC_002947/4140912‑4141207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.