New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4243583	40 (1.260)	5 (0.170)	5/234	NT	12.4%	coding (199/708 nt)	PP_3720	NAD(P)H quinone oxidoreductase
	?	NC_002947	= 4243607	33 (1.100)					coding (175/708 nt)	PP_3720	NAD(P)H quinone oxidoreductase

GTCGATCCAGCCCTTGAGCATGGCCGGGGCCGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4243434‑4243583 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGA  <  NC_002947/4243607‑4243537                                                                                                                                                                                                                               GTCGATCCAGCCCTTGAGCATGGCCGGGGCCGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGC                                                                         <  1:143822/150‑1                           GGGCCGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCCCCAGCGCGAGAACCCCGAGTACCTCGTGTATGC                                               <  2:691298/150‑1                                    ACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCA                                      <  2:70294/150‑1                                           GATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAG                               <  1:123544/150‑1                                                             CAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCGAGAACCCCGAGTACCTCGTGTATGCGCTGGA                                         <  1:777918/122‑1                                                             CAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCGAGAACCCCGAGTACCTCGTGTATGCGCTGGA                                         >  2:777918/1‑122                                                                                                                                                  AGCGCGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGA  <  1:643047/76‑1                                                                                                                                                  AGCGCGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGA  >  2:643047/1‑76                                                                                                                                                                                                                               GTCGATCCAGCCCTTGAGCATGGCCGGGGCCGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4243434‑4243583 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcGAGAACCCCGAGTACCTCGTGTATGCGCTGGAGCAGCGTCAGGGCGTCAAGCGCGGTGCCATTGCCGCAGA  <  NC_002947/4243607‑4243537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.