New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4243583	40 (1.260)	5 (0.170)	5/234	NT	12.4%	coding (199/708 nt)	PP_3720	NAD(P)H quinone oxidoreductase
	?	NC_002947	= 4243607	33 (1.100)					coding (175/708 nt)	PP_3720	NAD(P)H quinone oxidoreductase

CGGGGCCGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCTGCCGTGAACGATTGCGGTTCGGGGTG  >  NC_002947/4243458‑4243751                                                                                                                                                      |                                                                                                                                                 cGGGGCCGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTtctc                                                                                                                                                  <  1:830701/150‑1 (MQ=255)             ccAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACCCGAGGTACTCGGGGTTCTCGCGCTGGGTaaa                                                                                                                                      <  2:480866/150‑1 (MQ=255)             ccAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTaaa                                                                                                                                      >  1:272817/1‑150 (MQ=255)              cAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAg                                                                                                                                     >  1:620834/1‑150 (MQ=255)                          aaGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCACTGGGTAAAGTCATCGGCACTg                                                                                                                         <  1:850570/150‑1 (MQ=255)                                    ccAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCAACGGGt                                                                                                               >  1:358170/1‑150 (MQ=255)                                     cagcagATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCggg                                                                                                                >  2:518905/1‑148 (MQ=255)                                     cagcagATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCggg                                                                                                                <  1:518905/148‑1 (MQ=255)                                     cagcagATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGtt                                                                                                              >  1:717291/1‑150 (MQ=255)                                      agcagATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTc                                                                                                             <  2:620834/150‑1 (MQ=255)                                        cagATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCa                                                                                                           <  1:605032/150‑1 (MQ=255)                                         agATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTTACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAg                                                                                                          <  1:786500/150‑1 (MQ=255)                                           aTCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGcc                                                                                                        >  1:49066/1‑150 (MQ=255)                                                 ccACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGCGGGTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGc                                                                                                  >  1:83256/1‑150 (MQ=255)                                                       caGCTTGTCCAGCTCCTGCTGGATATCTGCGTCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACaa                                                                                            <  1:458225/150‑1 (MQ=255)                                                       caGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGTGTACaa                                                                                            <  2:49066/150‑1 (MQ=255)                                                       caGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACaa                                                                                            <  1:739790/150‑1 (MQ=255)                                                           ttGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCa                                                                                        >  2:129649/1‑150 (MQ=255)                                                             gTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACt                                                                                      <  2:272817/150‑1 (MQ=255)                                                                      ctgctgGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCAc                                                                             <  1:671745/150‑1 (MQ=255)                                                                           ggATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCtgat                                                                        >  1:148517/1‑150 (MQ=255)                                                                                tCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCgcgct                                                                                                                                             <  1:643047‑M2/76‑6 (MQ=255)                                                                                tCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCgcgct                                                                                                                                             >  2:643047‑M2/1‑71 (MQ=255)                                                                                              aCCGCGCTTGCCGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGt                                                     >  2:676056/1‑150 (MQ=255)                                                                                                cgcgCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTtctc                                                                                                                                                  >  1:513203/1‑55 (MQ=255)                                                                                                cgcgCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTtctc                                                                                                                                                  <  2:513203/55‑1 (MQ=255)                                                                                                 gcgcTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTc                                                  <  1:676056/150‑1 (MQ=255)                                                                                                            ccTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGt                                       >  2:730778/1‑150 (MQ=255)                                                                                                             cTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCgcgctggagcagcgtcagggcgtcaagcgcggtgccattgccgcagatatccagcaggagctggacaagctgttgtgggccgatctgctggtgctgaacttcccgatc                                      <  1:123544‑M2/150‑109 (MQ=255)                                                                                                                    tgctCCAGCGCATACACGAGGTACTCGGGGTTCTCgcgctggagcagcgtcagggcgtcaagcgcggtgccattgccgcagatatccagcaggagctggacaagctgttgtgggccgatctgctggtgctgaacttcccgatcttctggt                               <  2:70294‑M2/150‑116 (MQ=255)                                                                                                                    tgctCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCtt                                                                  <  1:517297/115‑1 (MQ=255)                                                                                                                    tgctCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCtt                                                                  >  2:517297/1‑115 (MQ=255)                                                                                                                    tgctCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAgg                               <  2:717291/150‑1 (MQ=255)                                                                                                                    tgctCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAgg                               <  1:291522/150‑1 (MQ=255)                                                                                                                       tCCAGCGCATACACGAGGTACTCGGGGTTCTCgcgctggagcagcgtcagggcgtcaagcgcggtgccattgccgcagatatccagcaggagctggacaagctgttgtgggccgatctgctg                                                        <  1:777918‑M2/122‑91 (MQ=255)                                                                                                                       tCCAGCGCATACACGAGGTACTCGGGGTTCTCgcgctggagcagcgtcagggcgtcaagcgcggtgccattgccgcagatatccagcaggagctggacaagctgttgtgggccgatctgctg                                                        >  2:777918‑M2/1‑32 (MQ=255)                                                                                                                       tCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCt                            >  1:77750/1‑150 (MQ=255)                                                                                                                       tCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCt                            >  1:13163/1‑150 (MQ=255)                                                                                                                          aGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCTGcc                         <  1:129649/150‑1 (MQ=255)                                                                                                                           gcgcATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTggg                                                               <  2:59898/111‑1 (MQ=255)                                                                                                                           gcgcATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTggg                                                               >  1:59898/1‑111 (MQ=255)                                                                                                                             gcATACACGAGGTACTCGGGGTTCTCgcgctggggcagcgtcagggcgtcaagcgcggtgccattgccgcagatatccagcaggagctggacaagctgttgtgggccgatctgctggtgctgaacttcccgatcttctggttctcggccc                      <  2:691298‑M2/150‑125 (MQ=255)                                                                                                                               aTACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGTGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCTGCCGTGaa                    <  2:358170/150‑1 (MQ=255)                                                                                                                                              ggggTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCTGCCGTGAACGATTGCGGTTCggg     <  2:238629/150‑1 (MQ=255)                                                                                                                                                 gTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCTGCCGTGAACGATTGCGGTTCGGGGTg  >  1:665056/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                 CGGGGCCGAGAACCAGAAGATCGGGAAGTTCAGCACCAGCAGATCGGCCCACAACAGCTTGTCCAGCTCCTGCTGGATATCTGCGGCAATGGCACCGCGCTTGACGCCCTGACGCTGCTCCAGCGCATACACGAGGTACTCGGGGTTCTCGCGCTGGGTAAAGTCATCGGCACTGGCCACCGGGTTCCAGCCCATGGCGTACAAGTCACTGACCTGCACCTGATGACCTTGGGCACGGAAGGTTTCCACAGCCTGGTCACGCAGGGCTGCCGTGAACGATTGCGGTTCGGGGTG  >  NC_002947/4243458‑4243751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.