New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4483589	44 (1.390)	4 (0.130)	4/234	NT	8.7%	intergenic (‑83/‑125)	PP_3975/PP_3976	hypothetical protein/isochorismatase family hydrolase
	?	NC_002947	= 4483615	42 (1.410)					intergenic (‑109/‑99)	PP_3975/PP_3976	hypothetical protein/isochorismatase family hydrolase

GATAGCCGTAGCCCTCTTCCCATGAAACGCCCCAGTAAGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCAATGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4483434‑4483589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcaATTTTGCGCTCTTGGAGGCGCTTTAATGCGCCATTGGTAGCGTCCAATCCGGTGCTAGGATTTCGGCCAGTCGGATCACGTCGATCCATTTTTCGCCAAGGAGAATCCAATGGCCGCTTCACGACCTTTCAACGACGACACTGC  <  NC_002947/4483615‑4483472                                                                                                                                                                                                                                                                                                              GATAGCCGTAGCCCTCTTCCCATGAAACTCCCCAGTAAGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCAAT                                                                                                                                                        >  1:754614/1‑150    AGCCGTAGCCCTCTTCCCATGAAACGCCCCAGTAAGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGGCCAAAGTCGGCCGACGTGATCCTACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCAATGGC                                                                                                                                                     >  1:527901/1‑150      CCGTAGCCCTCTTCCCATGAAACGCCCCAGTAAGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCAATGGCGC                                                                                                                                                   >  1:392790/1‑150                                      AGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCAATGGCGCAATTTTGCGCTCTTGGAGGCGCTTTAATGCGC                                                                                                                   >  2:796259/1‑150                                       GCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCAATGGCGCAATTTTGCGCTCTTGGAGGCGCTTTAATGCGCC                                                                                                                  <  1:796259/150‑1                                                       AAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCAATGGCGCAATTTTGCGCTCTTGGAGGCGCTTTAATGCGCCATT                                                                                                               >  1:521776/1‑137                                                       AAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCAATGGCGCAATTTTGCGCTCTTGGAGGCGCTTTAATGCGCCATT                                                                                                               <  2:521776/137‑1                                                                                                                                                       GGCGCAATTTTGCGCTCTTGGAGGCGCTTTAATGCGCCATTGGTAGCGTCCAATCCGGTGCTAGGATTTCGGCCAGTCGGATCACGTCGATCCATTTTTCGCCAAGGAGAATCCAATGGCCGCTTCACGACCTTTCAACTACGACACTGC  <  1:153671/150‑1                                                                                                                                                                                                                                                                                                              GATAGCCGTAGCCCTCTTCCCATGAAACGCCCCAGTAAGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCAATGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4483434‑4483589 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcaATTTTGCGCTCTTGGAGGCGCTTTAATGCGCCATTGGTAGCGTCCAATCCGGTGCTAGGATTTCGGCCAGTCGGATCACGTCGATCCATTTTTCGCCAAGGAGAATCCAATGGCCGCTTCACGACCTTTCAACGACGACACTGC  <  NC_002947/4483615‑4483472

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.