New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4483589	44 (1.390)	4 (0.130)	4/234	NT	8.7%	intergenic (‑83/‑125)	PP_3975/PP_3976	hypothetical protein/isochorismatase family hydrolase
	?	NC_002947	= 4483615	42 (1.410)					intergenic (‑109/‑99)	PP_3975/PP_3976	hypothetical protein/isochorismatase family hydrolase

CTCTTCCCATGAAACGCCCCAGTAAGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAATCCACACACTGAA  >  NC_002947/4483447‑4483734                                                                                                                                                |                                                                                                                                                  ctctTCCCATGAAACGCCCCAGTAAGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAgc                                                                                                                                            >  1:465093/1‑150 (MQ=255) ctctTCCCATGAAACGCCACCGTACGCAGCGCCGTCGTTGACAGTTCGTGATTCTGCGATTGGAGTCTCCTTGGCTAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAgc                                                                                                                                            >  2:225985/1‑150 (MQ=255) ccctgtccATGAAGCGCCCCACTAAGCAGTGTCGTCGTTGAAAGGTCGGGAAGCGGCCATTGGATTCTCCTTGACGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCCCCGGATTGGACGCTACCA‑ATGGCGCATTAAAgc                                                                                                                                            <  1:520068/144‑1 (MQ=255)   ctTCCCATGAAACGCCCCAGTAAGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCTTTAATgcgc                                                                                                                                          <  1:823059/150‑1 (MQ=255)       ccATGAAACGCCCCAGTAAGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCTTTAATGCGccatt                                                                                                                                      <  1:688477/150‑4 (MQ=255)         aTGAAACGCCCCAGTAAGCAGTGTCGTCGCTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTTGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCaa                                                                                                                                    >  2:695340/1‑150 (MQ=255)           gAAACGCCCCAGTAAGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCAtt                                                                                                                                                 >  2:457336/1‑135 (MQ=255)           gAAACGCCCCAGTAAGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCAtt                                                                                                                                                 <  1:457336/135‑1 (MQ=255)           gAAACGCCCCAGTAAGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAaga                                                                                                                                  >  1:98625/1‑150 (MQ=255)                         aGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCAattttgcgctcttggaggcgctttaatgcgc                                                                                                                    >  2:796259‑M1/1‑119 (MQ=255)                          gCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCAattttgcgctcttggaggcgctttaatgcgcc                                                                                                                   <  1:796259‑M1/150‑33 (MQ=255)                          gCAGTGTCGTAGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATtgcgcc                                                                                                                   <  1:153671‑M2/150‑7 (MQ=255)                                   tcgtTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCg                                                                                                          >  2:403329/1‑150 (MQ=255)                                    cgtTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGc                                                                                                         <  2:467392/150‑1 (MQ=255)                                      ttGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTg                                                                                                       >  2:800022/1‑150 (MQ=255)                                          aaGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCAattttgcgctcttggaggcgctttaatgcgccatt                                                                                                                >  1:521776‑M1/1‑102 (MQ=255)                                          aaGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCAattttgcgctcttggaggcgctttaatgcgccatt                                                                                                                <  2:521776‑M1/137‑36 (MQ=255)                                              tCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTc                                                                                               <  2:153671/150‑1 (MQ=255)                                                     gCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTc                                                                                               <  1:515060/143‑1 (MQ=255)                                                     gCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTc                                                                                               >  2:515060/1‑143 (MQ=255)                                                        gCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTAAGAGATCG‑GCAAGAAAGCGCCTCCAAGAGCGCAAAATTGAAAGACCGATTCCCTGAGTGTTTCGCTATCTTgg                                                                                     >  1:444481/1‑150 (MQ=255)                                                         ccATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTggg                                                                                    <  2:754614/150‑1 (MQ=255)                                                           aTTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCt                                                                                  >  1:158956/1‑150 (MQ=255)                                                            ttGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAgcgc                                                                                                                                          <  2:749282/93‑1 (MQ=255)                                                            ttGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAgcgc                                                                                                                                          >  1:749282/1‑93 (MQ=255)                                                            ttGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCGGAGTGTTTCGCTATCTTGGGCTg                                                                                 <  2:98625/150‑1 (MQ=255)                                                                aTTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCAc                                                                             <  2:392790/150‑1 (MQ=255)                                                                 ttCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACt                                                                            >  1:563755/1‑150 (MQ=255)                                                                       ttGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGcga                                                                      >  2:490578/1‑150 (MQ=255)                                                                          gCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGcgacga                                                                   <  2:527901/150‑1 (MQ=255)                                                                           cGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGc                                                                                                         >  2:73237/1‑111 (MQ=255)                                                                           cGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGc                                                                                                         <  1:73237/111‑1 (MQ=255)                                                                               aaaTGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACccgc                                                              >  1:759859/1‑150 (MQ=255)                                                                               aaaTGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACccgc                                                              <  2:465093/150‑1 (MQ=255)                                                                                   ggATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGaa                                                          >  2:842567/1‑150 (MQ=255)                                                                                    gATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGaaa                                                         >  1:81072/1‑150 (MQ=255)                                                                                        gACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCg                                                                                              <  1:372293/109‑1 (MQ=255)                                                                                        gACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCg                                                                                              >  2:372293/1‑109 (MQ=255)                                                                                         aCGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAACAActc                                                    >  2:92020/1‑150 (MQ=255)                                                                                           gTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACtctc                                                  <  1:403329/150‑1 (MQ=255)                                                                                            tGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCg                                                 <  1:800022/150‑1 (MQ=255)                                                                                            tGATCCGACTGGCCGAAAACCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGCGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCg                                                 <  1:695340/150‑1 (MQ=255)                                                                                                 cGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTc                                                                           >  2:685696/1‑119 (MQ=255)                                                                                                 cGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTc                                                                           <  1:685696/119‑1 (MQ=255)                                                                                                  gACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCg                                           <  2:158956/150‑1 (MQ=255)                                                                                                   attGGCCGAAATCCTAGCACCGGATTGGGCGCTACCA‑ATGGCGCATTNAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTAGCTGAGTGTTTCGCTATCTTGGGCTGGCACTGCGCGACGACCCGCCGAAAACCTCTCGCCACCgg                                          >  1:359468/3‑149 (MQ=255)                                                                                                                     aCCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTCCGGCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAAc                        <  1:225985/150‑1 (MQ=255)                                                                                                                               aCGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAAt              <  2:329097/150‑1 (MQ=255)                                                                                                                                      cA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAATCcacaca       <  2:563755/150‑1 (MQ=255)                                                                                                                                       a‑aTGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATtgcgccattggtagcgtccaatccggtgctaggatttcggccagtcggatcacgtcgatccatttttcgccaaggagaatccaatggccgcttcacgacctt                   <  2:521776‑M2/137‑103 (MQ=255)                                                                                                                                       a‑aTGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATtgcgccattggtagcgtccaatccggtgctaggatttcggccagtcggatcacgtcgatccatttttcgccaaggagaatccaatggccgcttcacgacctt                   >  1:521776‑M2/1‑35 (MQ=255)                                                                                                                                         aTGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAATCCACACACt     >  1:358472/1‑150 (MQ=255)                                                                                                                                          tGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAATCCACACACTg    >  1:412448/1‑150 (MQ=255)                                                                                                                                           ggCGCAattttgcgctcttggaggcgctttaatgcgccattggtagcgtccaatccggtgctaggatttcggccagtcggatcacgtcgatccatttttcgccaaggagaatccaatggccgcttcacgacctttcaactacgacactgc   <  1:153671‑M1/150‑145 (MQ=255)                                                                                                                                           ggCGCATTAAAGCGCCTCCAAGAGCGCAAAATtgcgccattggtagcgtccaatccggtgctaggatttcggccagtcggatcacgtcgatccatttttcgccaaggagaatccaatggccgcttcacgacctttcaacgacgacactgc   <  1:796259‑M2/150‑119 (MQ=255)                                                                                                                                            gcgcATTAAAGCGCCTCCAAGAGCGCAAAATtgcgccattggtagcgtccaatccggtgctaggatttcggccagtcggatcacgtcgatccatttttcgccaaggagaatccaatggccgcttcacgacctttcaacgacgacactgct  >  2:796259‑M2/1‑31 (MQ=255)                                                                                                                                                |                                                                                                                                                  CTCTTCCCATGAAACGCCCCAGTAAGCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAATCCACACACTGAA  >  NC_002947/4483447‑4483734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.