New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4483589	44 (1.390)	4 (0.130)	4/234	NT	8.7%	intergenic (‑83/‑125)	PP_3975/PP_3976	hypothetical protein/isochorismatase family hydrolase
	?	NC_002947	= 4483615	42 (1.410)					intergenic (‑109/‑99)	PP_3975/PP_3976	hypothetical protein/isochorismatase family hydrolase

GCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAATCCACACACTGAAGTCCTGACCCCGC  >  NC_002947/4483472‑4483747                                                                                                                                                 |                                                                                                                                     gCAGTGTCGTAGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATtgcgcc                                                                                                                                <  1:153671‑M2/150‑7 (MQ=255)          tcgtTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCg                                                                                                                       >  2:403329/1‑150 (MQ=255)           cgtTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGc                                                                                                                      <  2:467392/150‑1 (MQ=255)             ttGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTg                                                                                                                    >  2:800022/1‑150 (MQ=255)                     tCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTc                                                                                                            <  2:153671/150‑1 (MQ=255)                            gCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTc                                                                                                            <  1:515060/143‑1 (MQ=255)                            gCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTc                                                                                                            >  2:515060/1‑143 (MQ=255)                               gCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTAAGAGATCG‑GCAAGAAAGCGCCTCCAAGAGCGCAAAATTGAAAGACCGATTCCCTGAGTGTTTCGCTATCTTgg                                                                                                  >  1:444481/1‑150 (MQ=255)                                ccATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTggg                                                                                                 <  2:754614/150‑1 (MQ=255)                                  aTTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCt                                                                                               >  1:158956/1‑150 (MQ=255)                                   ttGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCGGAGTGTTTCGCTATCTTGGGCTg                                                                                              <  2:98625/150‑1 (MQ=255)                                       aTTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCAc                                                                                          <  2:392790/150‑1 (MQ=255)                                        ttCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACt                                                                                         >  1:563755/1‑150 (MQ=255)                                              ttGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGcga                                                                                   >  2:490578/1‑150 (MQ=255)                                                 gCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGcgacga                                                                                <  2:527901/150‑1 (MQ=255)                                                  cGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGc                                                                                                                      <  1:73237/111‑1 (MQ=255)                                                  cGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGc                                                                                                                      >  2:73237/1‑111 (MQ=255)                                                      aaaTGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACccgc                                                                           >  1:759859/1‑150 (MQ=255)                                                      aaaTGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACccgc                                                                           <  2:465093/150‑1 (MQ=255)                                                          ggATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGaa                                                                       >  2:842567/1‑150 (MQ=255)                                                           gATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGaaa                                                                      >  1:81072/1‑150 (MQ=255)                                                               gACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCg                                                                                                           <  1:372293/109‑1 (MQ=255)                                                               gACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCg                                                                                                           >  2:372293/1‑109 (MQ=255)                                                                aCGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAACAActc                                                                 >  2:92020/1‑150 (MQ=255)                                                                  gTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACtctc                                                               <  1:403329/150‑1 (MQ=255)                                                                   tGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCg                                                              <  1:800022/150‑1 (MQ=255)                                                                   tGATCCGACTGGCCGAAAACCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGCGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCg                                                              <  1:695340/150‑1 (MQ=255)                                                                        cGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTc                                                                                        <  1:685696/119‑1 (MQ=255)                                                                        cGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTc                                                                                        >  2:685696/1‑119 (MQ=255)                                                                         gACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCg                                                        <  2:158956/150‑1 (MQ=255)                                                                          attGGCCGAAATCCTAGCACCGGATTGGGCGCTACCA‑ATGGCGCATTNAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTAGCTGAGTGTTTCGCTATCTTGGGCTGGCACTGCGCGACGACCCGCCGAAAACCTCTCGCCACCgg                                                       >  1:359468/3‑149 (MQ=255)                                                                                            aCCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTCCGGCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAAc                                     <  1:225985/150‑1 (MQ=255)                                                                                                      aCGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAAt                           <  2:329097/150‑1 (MQ=255)                                                                                                             cA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAATCcacaca                    <  2:563755/150‑1 (MQ=255)                                                                                                              a‑aTGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATtgcgccattggtagcgtccaatccggtgctaggatttcggccagtcggatcacgtcgatccatttttcgccaaggagaatccaatggccgcttcacgacctt                                <  2:521776‑M2/137‑103 (MQ=255)                                                                                                              a‑aTGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATtgcgccattggtagcgtccaatccggtgctaggatttcggccagtcggatcacgtcgatccatttttcgccaaggagaatccaatggccgcttcacgacctt                                >  1:521776‑M2/1‑35 (MQ=255)                                                                                                                aTGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAATCCACACACt                  >  1:358472/1‑150 (MQ=255)                                                                                                                 tGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAATCCACACACTg                 >  1:412448/1‑150 (MQ=255)                                                                                                                  ggCGCATTAAAGCGCCTCCAAGAGCGCAAAATtgcgccattggtagcgtccaatccggtgctaggatttcggccagtcggatcacgtcgatccatttttcgccaaggagaatccaatggccgcttcacgacctttcaacgacgacactgc                <  1:796259‑M2/150‑119 (MQ=255)                                                                                                                   gcgcATTAAAGCGCCTCCAAGAGCGCAAAATtgcgccattggtagcgtccaatccggtgctaggatttcggccagtcggatcacgtcgatccatttttcgccaaggagaatccaatggccgcttcacgacctttcaacgacgacactgct               >  2:796259‑M2/1‑31 (MQ=255)                                                                                                                        ttAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAATCCACACACTGAAGTCCt          <  2:358472/150‑1 (MQ=255)                                                                                                                            aGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATATTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGAGCAGAACAATGAGCAATCCACACACTGAAGTGCTAAcc      >  1:88511/1‑150 (MQ=255)                                                                                                                                ccTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAATCCACACACTGAAGTCCTGACCCCGc  <  2:40262/150‑1 (MQ=255)                                                                                                                                   ccAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTggg                                                                                                 <  2:136590/52‑1 (MQ=255)                                                                                                                                   ccAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTggg                                                                                                 >  1:136590/1‑52 (MQ=255)                                                                                                                                           gcAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACtctc                                                               >  1:773631/1‑78 (MQ=255)                                                                                                                                           gcAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACtctc                                                               <  2:773631/78‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                     GCAGTGTCGTCGTTGAAAGGTCGTGAAGCGGCCATTGGATTCTCCTTGGCGAAAAATGGATCGACGTGATCCGACTGGCCGAAATCCTAGCACCGGATTGGACGCTACCA‑ATGGCGCATTAAAGCGCCTCCAAGAGCGCAAAATTGCGCCACCGATTCGCTGAGTGTTTCGCTATCTTGGGCTGGCACTCGGCGACGACCCGCCGAAAAACTCTCGCCACCGTTCAGCAAAAGGGAAGAACAATGAGCAATCCACACACTGAAGTCCTGACCCCGC  >  NC_002947/4483472‑4483747

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.