New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4748399 =	39 (1.230)	4 (0.130)	4/240	NT	9.4%	coding (58/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein
	?	NC_002947	4748429 =	39 (1.270)					coding (88/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein

GTTCAGGGCGCGGGGCTCGAACACTGCGCCAGAGAGGATGTGGGCGCCGACTTCAGAGCCTTTCTCCACCACGCAGACGCTGATTTCGCTACCGGCTTCGGCGGCCTTCTGCTTCAGGCGGCAGGCGGCGGACAGGCCCGCCGGGCCGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4748551‑4748399 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTC  >  NC_002947/4748429‑4748503                                                                                                                                                                                                                                      GTTCAGGGCGCGGGGCTCGAACACTGCGCCAGAGAGGATGTGGGCGCCGACTTCAGAGCCTTTCTCCACCACGCAGACGCTGATTTCGCTACCGGCTTCGGCGGCCTTCTGCTTCAGGCGGCAGGCGGCGGACAGGCCCGCCGGGCCGGC                                                                                >  1:783060/1‑150                                                                                                              TGCTTCAGGCGGCAGGCGGCGGACAGGCCCGCCGGGCCGGCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGT                     <  1:657856/100‑1                                                                                                              TGCTTCAGGCGGCAGGCGGCGGACAGGCCCGCCGGGCCGGCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGT                     >  2:657856/1‑100                                                                                                                               GGCGGACAGGCCCGCCGGGCCGGCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTC  >  1:140224/1‑102                                                                                                                               GGCGGACAGGCCCGCCGGGCCGGCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTC  <  2:140224/102‑1                                                                                                                                                                                                                                      GTTCAGGGCGCGGGGCTCGAACACTGCGCCAGAGAGGATGTGGGCGCCGACTTCAGAGCCTTTCTCCACCACGCAGACGCTGATTTCGCTACCGGCTTCGGCGGCCTTCTGCTTCAGGCGGCAGGCGGCGGACAGGCCCGCCGGGCCGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4748551‑4748399 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGCGTGGTGGAGAAAGGCTCTGAAGTC  >  NC_002947/4748429‑4748503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.