New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4748399 =	39 (1.230)	4 (0.130)	4/240	NT	9.4%	coding (58/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein
	?	NC_002947	4748429 =	39 (1.270)					coding (88/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein

AGTCCGTCATTTGCCCAGCTACAGTTCCGCCGTTGCGTAGAACCGCTGCGAATGCCCCGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTC  >  NC_002947/4748250‑4748533                                                                                                                                                      |                                                                                                                                        aGTCCGTCATTTGCCCAGCTACAGTTCCGCCGTTGCGTAGAACCGCTGCGAATGCCCCGCCCCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCAtcgtcg                                                                                                                                         >  2:290146/1‑150 (MQ=255)            tGCCCAGCTACAGTTCCGCCGTTGCGTAGAACCGCTGCGAATGCCCCGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGccggcccg                                                                                                                              <  2:431220/150‑1 (MQ=255)                     aCAGTTCCGCGGTTGCGTAGAACCGCTGCGAATGCCCCGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTg                                                                                                                     >  1:536102/1‑150 (MQ=255)                     aCAGTTCCGCCGTTGCGTAGAACCGCTGCGAATGCCCCGCACCCATAAGACAAAGCAACAGCACGAGCCTCGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTg                                                                                                                     >  1:399354/1‑150 (MQ=255)                         ttCCGCCGTTGCGTAGAACCGCTGCGAATGCCCCGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTccg                                                                                                                 >  1:417758/1‑150 (MQ=255)                                       aGAACCGCTGCGAATGCCCCGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGccgcctgccgcctg                                                                                                   >  2:747769/1‑150 (MQ=255)                                                        cccGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGa                                                                                  >  1:778654/1‑150 (MQ=255)                                                         ccGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGGACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGaa                                                                                 <  1:747769/150‑1 (MQ=255)                                                         ccGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGaa                                                                                 >  1:826341/1‑150 (MQ=255)                                                          cGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAg                                                                                <  2:826341/150‑1 (MQ=255)                                                               ccATAAGACAACGCAACAGCACGAGCCTTGAAGAGCCGGAGAAAACCAGTGGAACGCGAATACATGGAATACGACGTGGTCATCGCCGGCGCCGACCCGGCGGGCCTGTGCGCCGCCTGCCGCCTGAAGCGGAAGGCCGCCGAACCCggc                                                                           >  2:258470/1‑149 (MQ=255)                                                                cATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTa                                                                          <  2:536102/150‑1 (MQ=255)                                                                cATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTa                                                                          >  2:624372/1‑150 (MQ=255)                                                                  tAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGCCTGGCGTCGGCGCCGGCCCGGCGGGCCTGTACCCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGc                                                                        >  1:828132/1‑150 (MQ=255)                                                                     gACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCggg                                                                                                                         >  2:778207/1‑98 (MQ=255)                                                                     gACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCggg                                                                                                                         <  1:778207/98‑1 (MQ=255)                                                                      aCAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGgccgcc                                                                                    <  2:220080/134‑1 (MQ=255)                                                                      aCAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGgccgcc                                                                                    >  1:220080/1‑134 (MQ=255)                                                                           gacttcagagcctttctccaccacgcagacgctgatttcgctaccggcttcggcggccttctgcttcaggcggcaGGCGCCGGCCCGGCGGGCCTGTccgcc                                                                                                               >  1:140224‑M1/76‑102 (MQ=255)                                                                           gacttcagagcctttctccaccacgcagacgctgatttcgctaccggcttcggcggccttctgcttcaggcggcaGGCGCCGGCCCGGCGGGCCTGTccgcc                                                                                                               <  2:140224‑M1/27‑1 (MQ=255)                                                                               cAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGACATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCt                                                           >  1:284068/1‑150 (MQ=255)                                                                                    cGAGCCTCGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑gtg                                                     <  2:399354/150‑1 (MQ=255)                                                                                            gatgaGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGaa                                             >  1:477938/1‑150 (MQ=255)                                                                                              accacgcagacgctgatttcgctaccggcttcggcggccttctgcttcaggcggcaGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCa                                                                                              >  2:657856‑M1/57‑100 (MQ=255)                                                                                              accacgcagacgctgatttcgctaccggcttcggcggccttctgcttcaggcggcaGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCa                                                                                              <  1:657856‑M1/44‑1 (MQ=255)                                                                                               gaGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGc                                                                               <  1:655365/114‑1 (MQ=255)                                                                                               gaGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGc                                                                               >  2:655365/1‑114 (MQ=255)                                                                                                 gTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑gtggtg                                                  >  1:297614/1‑140 (MQ=255)                                                                                                 gTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑gtggtg                                                  <  2:297614/140‑1 (MQ=255)                                                                                                      agagaACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGaa                                   <  2:828132/150‑1 (MQ=255)                                                                                                      agagaACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGaa                                   <  1:290146/150‑1 (MQ=255)                                                                                                       gagaACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGga                                                >  2:341115/1‑136 (MQ=255)                                                                                                       gagaACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGga                                                <  1:341115/136‑1 (MQ=255)                                                                                                            ccAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGgc                             <  1:624372/150‑1 (MQ=255)                                                                                                                   aaCGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCcaca                      >  1:14933/1‑150 (MQ=255)                                                                                                                      gcgAATACATGGAATTCGACGTGGTCAACGTCGACGCCGGGCCGGGGCACTACTGCGCTGCCTGCCGCCTGTTTTTGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATcc                   >  1:149605/1‑150 (MQ=255)                                                                                                                          aTACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGACGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCctctc               >  1:790188/1‑150 (MQ=255)                                                                                                                              aTGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGACGCCGAAGCCGGTAGCGAAATGAGGGAATGCAATAGCGG‑GAAATGGTCTGAAGTCGGCGCCCACATCCTCTCTGgc           >  1:192361/1‑150 (MQ=255)                                                                                                                               tGGAATTCTACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGgcg          >  2:783060/1‑150 (MQ=255)                                                                                                                                ggAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCca                        >  2:163605/1‑135 (MQ=255)                                                                                                                                ggAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCca                        <  1:163605/135‑1 (MQ=255)                                                                                                                                    ttCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGACGCCCACATCCTCTCTGGCGCAgtg     >  1:98765/1‑150 (MQ=255)                                                                                                                                      cGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGtt   <  2:417758/150‑1 (MQ=255)                                                                                                                                       gACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTc  >  1:335139/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                        AGTCCGTCATTTGCCCAGCTACAGTTCCGCCGTTGCGTAGAACCGCTGCGAATGCCCCGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTC  >  NC_002947/4748250‑4748533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.