New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4748399 =	39 (1.230)	4 (0.130)	4/240	NT	9.4%	coding (58/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein
	?	NC_002947	4748429 =	39 (1.270)					coding (88/1683 nt)	PP_4203	ubiquinone oxidoreductase electron transfer flavoprotein

AGAACCGCTGCGAATGCCCCGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAA  >  NC_002947/4748288‑4748572                                                                                                                                              |                                                                                                                                                 aGAACCGCTGCGAATGCCCCGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGccgcctgccgcctg                                                                                                                                          >  2:747769/1‑150 (MQ=255)                  cccGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGa                                                                                                                         >  1:778654/1‑150 (MQ=255)                   ccGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGGACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGaa                                                                                                                        <  1:747769/150‑1 (MQ=255)                   ccGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGaa                                                                                                                        >  1:826341/1‑150 (MQ=255)                    cGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAg                                                                                                                       <  2:826341/150‑1 (MQ=255)                         ccATAAGACAACGCAACAGCACGAGCCTTGAAGAGCCGGAGAAAACCAGTGGAACGCGAATACATGGAATACGACGTGGTCATCGCCGGCGCCGACCCGGCGGGCCTGTGCGCCGCCTGCCGCCTGAAGCGGAAGGCCGCCGAACCCggc                                                                                                                  >  2:258470/1‑149 (MQ=255)                          cATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTa                                                                                                                 >  2:624372/1‑150 (MQ=255)                          cATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTa                                                                                                                 <  2:536102/150‑1 (MQ=255)                            tAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGCCTGGCGTCGGCGCCGGCCCGGCGGGCCTGTACCCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGc                                                                                                               >  1:828132/1‑150 (MQ=255)                                aCAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGgccgcc                                                                                                                           >  1:220080/1‑134 (MQ=255)                                aCAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGgccgcc                                                                                                                           <  2:220080/134‑1 (MQ=255)                                         cAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGACATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCt                                                                                                  >  1:284068/1‑150 (MQ=255)                                              cGAGCCTCGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑gtg                                                                                            <  2:399354/150‑1 (MQ=255)                                                      gatgaGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGaa                                                                                    >  1:477938/1‑150 (MQ=255)                                                        accacgcagacgctgatttcgctaccggcttcggcggccttctgcttcaggcggcaGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCa                                                                                                                                     <  1:657856‑M1/44‑1 (MQ=255)                                                        accacgcagacgctgatttcgctaccggcttcggcggccttctgcttcaggcggcaGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCa                                                                                                                                     >  2:657856‑M1/57‑100 (MQ=255)                                                         gaGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGc                                                                                                                      <  1:655365/114‑1 (MQ=255)                                                         gaGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGc                                                                                                                      >  2:655365/1‑114 (MQ=255)                                                           gTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑gtggtg                                                                                         <  2:297614/140‑1 (MQ=255)                                                           gTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑gtggtg                                                                                         >  1:297614/1‑140 (MQ=255)                                                                agagaACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGaa                                                                          <  1:290146/150‑1 (MQ=255)                                                                agagaACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGaa                                                                          <  2:828132/150‑1 (MQ=255)                                                                 gagaACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGga                                                                                       >  2:341115/1‑136 (MQ=255)                                                                 gagaACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGga                                                                                       <  1:341115/136‑1 (MQ=255)                                                                      ccAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGgc                                                                    <  1:624372/150‑1 (MQ=255)                                                                             aaCGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCcaca                                                             >  1:14933/1‑150 (MQ=255)                                                                                gcgAATACATGGAATTCGACGTGGTCAACGTCGACGCCGGGCCGGGGCACTACTGCGCTGCCTGCCGCCTGTTTTTGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATcc                                                          >  1:149605/1‑150 (MQ=255)                                                                                    aTACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGACGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCctctc                                                      >  1:790188/1‑150 (MQ=255)                                                                                        aTGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGACGCCGAAGCCGGTAGCGAAATGAGGGAATGCAATAGCGG‑GAAATGGTCTGAAGTCGGCGCCCACATCCTCTCTGgc                                                  >  1:192361/1‑150 (MQ=255)                                                                                         tGGAATTCTACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGgcg                                                 >  2:783060/1‑150 (MQ=255)                                                                                          ggAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCca                                                               >  2:163605/1‑135 (MQ=255)                                                                                          ggAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCca                                                               <  1:163605/135‑1 (MQ=255)                                                                                              ttCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGACGCCCACATCCTCTCTGGCGCAgtg                                            >  1:98765/1‑150 (MQ=255)                                                                                                cGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGtt                                          <  2:417758/150‑1 (MQ=255)                                                                                                 gACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTc                                         >  1:335139/1‑150 (MQ=255)                                                                                                  tgcttcaggcggcaggcggcggacaggcccgccgggccggcgccTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑gtggt                                                                                          <  1:657856‑M2/56‑1 (MQ=255)                                                                                                  tgcttcaggcggcaggcggcggacaggcccgccgggccggcgccTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑gtggt                                                                                          >  2:657856‑M2/45‑100 (MQ=255)                                                                                                                   ggcggacaggcccgccgggccggcgccTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTc                                                                       >  1:140224‑M2/28‑102 (MQ=255)                                                                                                                   ggcggacaggcccgccgggccggcgccTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTc                                                                       <  2:140224‑M2/75‑1 (MQ=255)                                                                                                                   GCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAAc                       >  1:783060‑M1/1‑150 (MQ=255)                                                                                                                         ccggcGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGACCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTg                 >  1:577873/1‑150 (MQ=255)                                                                                                                           ggcggGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGtt               >  1:632375/1‑150 (MQ=255)                                                                                                                           ggcggGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGACCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGtt               <  2:577873/150‑1 (MQ=255)                                                                                                                            gcggGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGACGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTc              <  2:790188/150‑1 (MQ=255)                                                                                                                               ggCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTcccc           >  1:533542/1‑150 (MQ=255)                                                                                                                                  cTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGAc        >  2:812637/1‑150 (MQ=255)                                                                                                                                     tCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTgg     >  2:715028/1‑150 (MQ=255)                                                                                                                                        gccgcctgccgcctGAAGCGGGAGGCCGCCTAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGaaa  <  1:44781/150‑1 (MQ=255)                                                                                                                                        gccgcctgccgcctGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGaaa  >  1:289191/1‑150 (MQ=255)                                                                                                                                              |                                                                                                                                                 AGAACCGCTGCGAATGCCCCGCACCCATAAGACAAAGCAACAGCACGAGCCTTGATGAGTAGGAGAGAACCAGTGGAACGCGAATACATGGAATTCGACGTGGTCATCGTCGGCGCCGGCCCGGCGGGCCTGTCCGCCGCCTGCCGCCTGAAGCAGAAGGCCGCCGAAGCCGGTAGCGAAATCAGCGTCTGC‑GTGGTGGAGAAAGGCTCTGAAGTCGGCGCCCACATCCTCTCTGGCGCAGTGTTCGAGCCCCGCGCCCTGAACGAGCTGTTCCCCGACTGGAAA  >  NC_002947/4748288‑4748572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.