New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5083241 =	34 (1.070)	3 (0.100)	3/240	NT	9.1%	coding (1073/2625 nt)	alaS	alanine‑‑tRNA ligase
	?	NC_002947	5083266 =	27 (0.880)					coding (1048/2625 nt)	alaS	alanine‑‑tRNA ligase

TGCGCCGCATCATTCGCCGCGCTTGCCGTCACGGCAACAAGCTGGGCGCCAAGGGCAGCTTCTTCTACCAGATCGTTGCCGCACTGGCCGCTGAAATGGGCGAAGCCTTCCCGGAGCTGAAGAGCCAGCAAGCGCAC‑ATCGAGCGCGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5083391‑5083241 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATGCGGCGCAGCACGTAGCCACGGCCTTCGTTG  >  NC_002947/5083266‑5083414                                                                                                                                                                                                                                                                                                               TGCGCCGCATCATTCGCCGCGCTTGCCGTCACGGCAACAAGCTGGGCGCCAAGGGCAGCTTCTTCTACCAGATCGTTGCCGCACTGGCCGCTGAAATGGGCGAAGCCTTCCCGGAGCTGAAGAGCCAGCAAGCGCAC‑ATCGAGCGCGTGC                                                                                                                                                        <  2:162504/150‑1                           CGTCACGGGAACTACCGGGGCGCCAAGGGCATCTTCTTCTACCAGATCGTTGCCGCACTGGCCGCTGAAATGGGCGAAGCCTTCCCGGAGCTGAAGAGCCAGCACGCGCTC‑GATGTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTC                                                                                                                              <  2:48766/150‑1                                                                     CAGATCGTTGCCGCACTGGCCGCTGAAATGGGCGAAGCCTTCCCGGAGCTGAAGAGCCAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCAT                                                                                                                        >  1:443425/1‑114                                                                     CAGATCGTTGCCGCACTGGCCGCTGAAATGGGCGAAGCCTTCCCGGAGCTGAAGAGCCAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCAT                                                                                                                        <  2:443425/114‑1                                                                                                                                                        TGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATGCGGCGCAGCACGTAGCCACGGCCTTCGTTG  <  1:564948/150‑1                                                                                                                                                        TGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATGCGGCGCAGCACGTAGCCACGGCCTTCGTTG  <  2:410599/150‑1                                                                                                                                                                                                                                                                                                               TGCGCCGCATCATTCGCCGCGCTTGCCGTCACGGCAACAAGCTGGGCGCCAAGGGCAGCTTCTTCTACCAGATCGTTGCCGCACTGGCCGCTGAAATGGGCGAAGCCTTCCCGGAGCTGAAGAGCCAGCAAGCGCAC‑ATCGAGCGCGTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5083391‑5083241 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATGCGGCGCAGCACGTAGCCACGGCCTTCGTTG  >  NC_002947/5083266‑5083414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.