| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5083241 = | 34 (1.070) | 3 (0.100) | 3/240 | NT | 9.1% | coding (1073/2625 nt) | alaS | alanine‑‑tRNA ligase |
| ? | NC_002947 | 5083266 = | 27 (0.880) | coding (1048/2625 nt) | alaS | alanine‑‑tRNA ligase | |||||
TACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATGCGGCGCAGCACGTAGCCACGGCCTTCGTTG > NC_002947/5083124‑5083414 | tACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTc < 2:37978/150‑1 (MQ=255) cTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGct < 2:75988/141‑1 (MQ=255) cTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGct > 1:75988/1‑141 (MQ=255) ttGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTg > 2:576860/1‑137 (MQ=255) ttGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTg < 1:576860/137‑1 (MQ=255) gaccacGTCGCCCGGTACCACGTAGCCATTCAGCTAGGCCAGGTCTTGCTCGAGGATGCGCAGAACCTGCTCAAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGaa < 2:394209/149‑1 (MQ=255) cGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCtt < 1:139272/150‑1 (MQ=255) gTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTTGGCTTTTAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTc < 2:117753/150‑1 (MQ=255) cgtcacgggaactaccggggcgccaagggcatcttcttctaccagatcgttgccgcactggccgctgaaatgggcgaagccttcccggagctgaagagccagcacgcgctcgatgtgcgcttgctGGCTCTTCAGCTCCGGGAAGGCTTc < 2:48766‑M2/25‑1 (MQ=255) cGCCCGGTACCACGTCGCCTTTCAGCTGGGACAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGCCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGc < 2:94971/150‑1 (MQ=255) cACGTCGCCTTTCAGCTGGGCCAAGTCTTGCTCGAGTATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGctc < 2:357555/118‑1 (MQ=255) cACGTCGCCTTTCAGCTGGGCCAAGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGctc > 1:357555/1‑118 (MQ=255) gCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCaa > 2:421476/1‑150 (MQ=255) aGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTgg > 1:410599/1‑150 (MQ=255) cTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTaga < 2:837470/150‑1 (MQ=255) tCGAGGATTCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCAGCCTTGCGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTCCAGCTCCGGGAAGGCTTGGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGaagaag > 2:386598/1‑150 (MQ=255) tCGAGGATGCGCAGGCCCTGCTTCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGaagaag < 2:822670/150‑1 (MQ=255) tCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGaagaag > 1:62708/1‑150 (MQ=255) tCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGaagaag > 1:63136/1‑150 (MQ=255) cagatcgttgccgcactggccgctgaaatgggcgaagccttcccggagctgaagagccagcacgcgctcgatgtgcgcttgctGGCTCTTCAGCTCCGGGAAGGCTTCGCCCAt < 2:443425‑M2/31‑1 (MQ=255) cagatcgttgccgcactggccgctgaaatgggcgaagccttcccggagctgaagagccagcacgcgctcgatgtgcgcttgctGGCTCTTCAGCTCCGGGAAGGCTTCGCCCAt > 1:443425‑M2/84‑114 (MQ=255) gAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCa > 1:392882/1‑110 (MQ=255) gAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCa < 2:392882/110‑1 (MQ=255) cctggagcAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCa > 2:287632/8‑150 (MQ=255) atgggcgaagccttcccggagctgaagagccAGCAAGCGCAC‑ATCGAGCGCGTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTg > 1:443425‑M1/32‑114 (MQ=255) atgggcgaagccttcccggagctgaagagccAGCAAGCGCAC‑ATCGAGCGCGTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTg < 2:443425‑M1/83‑1 (MQ=255) gaagccttcccggagctgaagagccAGCAAGCGCACATC‑GAGCGCGTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGATGCCCTTGGCGCCCCGGTAGTTCCCGTGACg < 2:48766‑M1/125‑1 (MQ=255) cGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGc < 2:845174/88‑1 (MQ=255) cGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGc > 1:845174/1‑88 (MQ=255) aaCTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCaa < 1:718837/150‑1 (MQ=255) gCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAgcgc > 2:265507/1‑150 (MQ=255) cttcGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGt < 2:470829/132‑1 (MQ=255) cttcGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGt > 1:470829/1‑132 (MQ=255) ccagggCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGaa > 2:489037/5‑150 (MQ=255) tgcGGCCTTGCGCACGCCCACGAT‑CTGCGCTTCCTGGCTCTGGAGCTTCGTGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAat < 2:437056/148‑1 (MQ=255) cTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATgcg < 1:175268/150‑1 (MQ=255) cTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATgcg > 2:745707/1‑150 (MQ=255) gAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTgg > 2:469530/1‑104 (MQ=255) gAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTgg < 1:469530/104‑1 (MQ=255) GCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATGCGGCgca < 2:162504‑M1/150‑1 (MQ=255) tGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATGCGGCGCAGCACGTAGCCACGGCCTTCGTTg < 2:410599‑M2/149‑1 (MQ=255) tGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATGCGGCGCAGCACGTAGCCACGGCCTTCGTTg < 1:564948‑M2/149‑1 (MQ=255) | TACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATGCGGCGCAGCACGTAGCCACGGCCTTCGTTG > NC_002947/5083124‑5083414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |