New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5083241 =	34 (1.070)	3 (0.100)	3/240	NT	9.1%	coding (1073/2625 nt)	alaS	alanine‑‑tRNA ligase
	?	NC_002947	5083266 =	27 (0.880)					coding (1048/2625 nt)	alaS	alanine‑‑tRNA ligase

CAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATGCG  >  NC_002947/5083092‑5083386                                                                                                                                                      |                                                                                                                                                   caacgaaggccgtggctacgtgctgcgccgcatcattcgccgcgcttgccgtcacggcaacaagctgggcgccaagggcagcttcttctaccagatcgttgccgcactggccgctgaaatgggcgaagccttcccggagctgaagagcca                                                                                                                                                    <  1:564948‑M1/1‑1 (MQ=255) caacgaaggccgtggctacgtgctgcgccgcatcattcgccgcgcttgccgtcacggcaacaagctgggcgccaagggcagcttcttctaccagatcgttgccgcactggccgctgaaatgggcgaagccttcccggagctgaagagcca                                                                                                                                                    <  2:410599‑M1/1‑1 (MQ=255)         tCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACgcgc                                                                                                                                            >  1:190215/1‑150 (MQ=255)            aTCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCg                                                                                                                                         >  1:437056/1‑150 (MQ=255)                ggAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAt‑gt                                                                                                                                    >  2:467876/1‑150 (MQ=255)                  aaGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTgc                                                                                                                                  <  1:467876/150‑1 (MQ=255)                     ccATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCt                                                                                                                               >  2:564948/1‑150 (MQ=255)                                 tACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTc                                                                                                                   <  2:37978/150‑1 (MQ=255)                                      cTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGct                                                                                                                       >  1:75988/1‑141 (MQ=255)                                      cTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGct                                                                                                                       <  2:75988/141‑1 (MQ=255)                                       ttGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTg                                                                                                                          >  2:576860/1‑137 (MQ=255)                                       ttGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTg                                                                                                                          <  1:576860/137‑1 (MQ=255)                                            gaccacGTCGCCCGGTACCACGTAGCCATTCAGCTAGGCCAGGTCTTGCTCGAGGATGCGCAGAACCTGCTCAAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGaa                                                                                                        <  2:394209/149‑1 (MQ=255)                                                 cGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCtt                                                                                                   <  1:139272/150‑1 (MQ=255)                                                  gTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTTGGCTTTTAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTc                                                                                                  <  2:117753/150‑1 (MQ=255)                                                    cGCCCGGTACCACGTCGCCTTTCAGCTGGGACAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGCCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGc                                                                                                <  2:94971/150‑1 (MQ=255)                                                              cACGTCGCCTTTCAGCTGGGCCAAGTCTTGCTCGAGTATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGctc                                                                                                                      <  2:357555/118‑1 (MQ=255)                                                              cACGTCGCCTTTCAGCTGGGCCAAGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGctc                                                                                                                      >  1:357555/1‑118 (MQ=255)                                                                            gCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCaa                                                                        >  2:421476/1‑150 (MQ=255)                                                                                    aGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTgg                                                                >  1:410599/1‑150 (MQ=255)                                                                                        cTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTaga                                                            <  2:837470/150‑1 (MQ=255)                                                                                             tCGAGGATTCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCAGCCTTGCGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTCCAGCTCCGGGAAGGCTTGGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGaagaag                                                       >  2:386598/1‑150 (MQ=255)                                                                                             tCGAGGATGCGCAGGCCCTGCTTCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGaagaag                                                       <  2:822670/150‑1 (MQ=255)                                                                                             tCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGaagaag                                                       >  1:63136/1‑150 (MQ=255)                                                                                             tCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGaagaag                                                       >  1:62708/1‑150 (MQ=255)                                                                                               gAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCa                                                                                             >  1:392882/1‑110 (MQ=255)                                                                                               gAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCa                                                                                             <  2:392882/110‑1 (MQ=255)                                                                                                             cctggagcAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCa                                       >  2:287632/8‑150 (MQ=255)                                                                                                                       atgggcgaagccttcccggagctgaagagccAGCAAGCGCAC‑ATCGAGCGCGTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTg                                                                 <  2:443425‑M1/83‑1 (MQ=255)                                                                                                                       atgggcgaagccttcccggagctgaagagccAGCAAGCGCAC‑ATCGAGCGCGTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTg                                                                 >  1:443425‑M1/32‑114 (MQ=255)                                                                                                                             gaagccttcccggagctgaagagccAGCAAGCGCACATC‑GAGCGCGTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGATGCCCTTGGCGCCCCGGTAGTTCCCGTGACg                       <  2:48766‑M1/125‑1 (MQ=255)                                                                                                                               cGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGc                                                                                   <  2:845174/88‑1 (MQ=255)                                                                                                                               cGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGc                                                                                   >  1:845174/1‑88 (MQ=255)                                                                                                                                 aaCTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCaa                   <  1:718837/150‑1 (MQ=255)                                                                                                                                     gCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAgcgc               >  2:265507/1‑150 (MQ=255)                                                                                                                                           cttcGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGt                           <  2:470829/132‑1 (MQ=255)                                                                                                                                           cttcGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGt                           >  1:470829/1‑132 (MQ=255)                                                                                                                                           ccagggCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGaa         >  2:489037/5‑150 (MQ=255)                                                                                                                                            tgcGGCCTTGCGCACGCCCACGAT‑CTGCGCTTCCTGGCTCTGGAGCTTCGTGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAat        <  2:437056/148‑1 (MQ=255)                                                                                                                                                  cTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATgcg  >  2:745707/1‑150 (MQ=255)                                                                                                                                                  cTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATgcg  <  1:175268/150‑1 (MQ=255)                                                                                                                                                     gAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTgg                                             >  2:469530/1‑104 (MQ=255)                                                                                                                                                     gAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTgg                                             <  1:469530/104‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGCTCGAT‑GTGCGCTTGCTGGCTCTTCAGCTCCGGGAAGGCTTCGCCCATTTCAGCGGCCAGTGCGGCAACGATCTGGTAGAAGAAGCTGCCCTTGGCGCCCAGCTTGTTGCCGTGACGGCAAGCGCGGCGAATGATGCG  >  NC_002947/5083092‑5083386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.