New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5174644 =	32 (1.010)	4 (0.130)	4/234	NT	11.9%	coding (384/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase
	?	NC_002947	5174705 =	29 (0.970)					coding (323/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase

CGCATCGCCGTACAGATGCCCAATGTGCTGCAGTACCCCATCGCCGTCTTCGGTGCCATGCGCGCCGGGCTGATCGTGGTCAATACCAACCCGCTGTACACCGAGCGCGAGATGCGCCACCAGTTCAAGGACAGTGGCGCGCGTGCGCTGGTGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5174799‑5174644 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgtacAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGCGCTCACCCGGTTTGAGGTCGGTGTGCTGCTGCAACCAGGCAGCGAAGGCTGCCGA  >  NC_002947/5174705‑5174853                                                                                                                                                                                                                                                                                                                   CGCATCGCCGTACAGATGCCCAATGTGCTGCAGTACCCCATCGCCGTCTTCGGTGCCATGCGCGCCGGGCTGATCGTGGTCAATACCAACCCGCTGTACACCGAGCGCGAGATGCGCCACCAGTTCAAGGACAGTGGCGCGCGTGCGCTG                                                                                                                                                             <  1:344834/150‑1       GCCGTACAGATGCCCAATGTGCTGCAGTACCCCATCGCCGTCTTCGGTGCCATGCGCGCCGGGCTGATCGTGGTCAATACCAACCCGCTGTACACCGAGCGCGAGATGCGCCACCAGTTCAAGGACAGTGGCGCGCGTGCGCTGGTGTAC                                                                                                                                                       <  1:540210/150‑1                                                                GCCGGGCTGATCGTGGTCAATACCAACCCGCTGTACACCGAGCGCGAGATGCGCCACCAGTTCAAGGACAGTGGCGCGCGTGCGCTGGTGTAC                                                                                                                                                       >  1:392964/1‑93                                                                GCCGGGCTGATCGTGGTCAATACCAACCCGCTGTACACCGAGCGCGAGATGCGCCACCAGTTCAAGGACAGTGGCGCGCGTGCGCTGGTGTAC                                                                                                                                                       <  2:392964/93‑1                                                                            GTGGTCAATACCAACCCGCTGTACACCGAGCGCGAGATGCGCCACCAGTTCAAGGACAGTGGCGCGCGTGCGCTGGTGTACCGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGC                                                                                  >  2:392450/1‑150                                                                                                     CCGAGCGCGAGATGCGCCACCAGTTCAAGGACAGTGGCGCGCGTGCGCTGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGC                                                         >  2:446759/1‑150                                                                                                             GAGATGCGCCACCAGTTCAAGGACAGTGGCGCGCGTGCGCTGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATATGTACGGCGATGCGCTCACCC                                                 >  2:841062/1‑150                                                                                                                     CCACCAGTTCAAGGACAGTGGCGCGCGTGCGCTGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGCGCTCACCCGGTTTGAG                                         <  1:446759/150‑1                                                                                                                                                          TACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGCGCTCACCCGGTTTGAGGTCGGTGTGCTGCTGCAACCAGGCAGCGAAGGCTGCC    <  2:653614/150‑1                                                                                                                                                            CAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGCGCTCACCCGGTTTGAGGTCGGTGTGCTGCTGCAACCAGGCAGCGAAGGCTGCCGA  >  2:221796/1‑150                                                                                                                                                                                                                                                                                                                   CGCATCGCCGTACAGATGCCCAATGTGCTGCAGTACCCCATCGCCGTCTTCGGTGCCATGCGCGCCGGGCTGATCGTGGTCAATACCAACCCGCTGTACACCGAGCGCGAGATGCGCCACCAGTTCAAGGACAGTGGCGCGCGTGCGCTGGTGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5174799‑5174644 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgtacAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGCGCTCACCCGGTTTGAGGTCGGTGTGCTGCTGCAACCAGGCAGCGAAGGCTGCCGA  >  NC_002947/5174705‑5174853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.