New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5174644 =	32 (1.010)	4 (0.130)	4/234	NT	11.9%	coding (384/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase
	?	NC_002947	5174705 =	29 (0.970)					coding (323/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase

GCAGGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGCGCTCACCCGGTTTGAGGTCGGTGTGCTGCTGCAACCAGGCAGCGAAGGCTGCCGA  >  NC_002947/5174559‑5174853                                                                                                                                                   |                                                                                                                                                     gcagGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCg                                                                                                                                                   <  1:690725/150‑1 (MQ=255)      tCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTg                                                                                                                                              >  1:297579/1‑150 (MQ=255)               tttGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGAACGCGCTTGCCGAACATGTTCAGTTAAACCAGCGAACGCGCGCCACTGTCCTTTAACTGGTGGCGCAGCTCGCGCACGGGGTACAGCGGGTTGGTATTGAcc                                                                                                                                     >  1:302936/1‑150 (MQ=255)                ttGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCCCGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCa                                                                                                                                    <  1:596139/150‑1 (MQ=255)                ttGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCa                                                                                                                                    >  1:102887/1‑150 (MQ=255)                 gctgcagtaccccatcgccgtcttcggtgccatgcgcgccgggctgatcgtggtcaataccaacccgcgGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCAc                                                                                                                                   >  2:392450‑M1/70‑150 (MQ=255)                   ccTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGa                                                                                                                                 <  2:102887/150‑1 (MQ=255)                    cTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGAt                                                                                                                                >  1:153019/1‑150 (MQ=255)                       gATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAg                                                                                                                             >  1:460868/1‑150 (MQ=255)                        aTCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGc                                                                                                                            <  2:297579/150‑1 (MQ=255)                              tATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGgcg                                                                                                                      >  2:642673/1‑150 (MQ=255)                                            aTCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGTTCGGTGTACAGCGCGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGaa                                                                                                        <  2:166444/150‑1 (MQ=255)                                               gggCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGAc                                                                                                     >  1:794017/1‑150 (MQ=255)                                                ggCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACg                                                                                                    >  1:371879/1‑150 (MQ=255)                                                     caCCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGAt                                                                                               <  1:165015/150‑1 (MQ=255)                                                        ctcctGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATggg                                                                                            <  1:676448/150‑1 (MQ=255)                                                         tcctGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGCTCAGCCCGGCGCGCATGGCCACGACGACGGCGAtcagg                                                                                           >  1:653614/1‑146 (MQ=255)                                                                  gtggtcaataccaacccgctgtacaccgagcgcgagatgcgccaccagttcaaggacagtggcgcgcgtgcgctggtgtacCGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTgcagc                                                                                  >  2:392450‑M2/82‑150 (MQ=255)                                                                        ccGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTg                                                                            >  2:383230/1‑150 (MQ=255)                                                                          gAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTggg                                                                          <  1:642673/150‑1 (MQ=255)                                                                              aTGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATc                                                                      <  2:371879/150‑1 (MQ=255)                                                                                 ttCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATggg                                                                                            <  1:430215/125‑1 (MQ=255)                                                                                 ttCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATggg                                                                                            >  2:430215/1‑125 (MQ=255)                                                                                 ttCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGt                                                                   >  1:312298/1‑150 (MQ=255)                                                                                    aGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACg                                                                >  1:308976/1‑150 (MQ=255)                                                                                      GTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGgc                                                                                                                       >  1:392964‑M1/1‑93 (MQ=255)                                                                                      GTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGgc                                                                                                                       <  2:392964‑M1/93‑1 (MQ=255)                                                                                      GTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGc                                                              <  1:540210‑M1/150‑1 (MQ=255)                                                                                           ccgagcgcgagatgcgccaccagttcaaggacagtggcgcgcgtgcgctggtgtacAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATgc                                                         >  2:446759‑M2/57‑150 (MQ=255)                                                                                            CAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATgcg                                                        <  1:344834‑M1/150‑1 (MQ=255)                                                                                              gcgcACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGCTCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCCCATTCGGCATCTGTACGGCGCTgcgcc                                                      >  2:211514/1‑149 (MQ=255)                                                                                                   gagatgcgccaccagttcaaggacagtggcgcgcgtgcgctggtgtacAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATATGTACGGCGATGCGCTCAccc                                                 >  2:841062‑M2/49‑150 (MQ=255)                                                                                                           ccaccagttcaaggacagtggcgcgcgtgcgctggtgtacAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGCGCTCACCCGGTTTGAg                                         <  1:446759‑M2/110‑1 (MQ=255)                                                                                                             tGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGCGCTCACCCGGTTTGAGGt                                       <  2:794017/150‑1 (MQ=255)                                                                                                              gTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGt                                                                                                                                                >  2:531093/1‑44 (MQ=255)                                                                                                              gTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGt                                                                                                                                                <  1:531093/44‑1 (MQ=255)                                                                                                                     aaCTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGCGCTCACCCGGTTTGAGGTCGGTGtgc                               >  2:701242/1‑150 (MQ=255)                                                                                                                               gcATCCCGCGCTCGGTGTAAAGCGGGTTGGTATTGACCACGATCAGTCCGGCGCGCATGTCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGCGCTCACCCGGTTTGCGGTCGGTGTGCTGCTGCAAcc                     >  2:212229/1‑150 (MQ=255)                                                                                                                                     cgcgCTCGGTGTACAGCTGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACTGCGATGCGCTCACCCGGTTTGAGGTCGGTGTGCTGCTGCAACCAGGCAg               <  2:302936/150‑1 (MQ=255)                                                                                                                                                tacAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGCGCTCACCCGGTTTGAGGTCGGTGTGCTGCTGCAACCAGGCAGCGAAGGCTGcc    <  2:653614‑M2/147‑1 (MQ=255)                                                                                                                                                  cAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGCGCTCACCCGGTTTGAGGTCGGTGTGCTGCTGCAACCAGGCAGCGAAGGCTGCCGa  >  2:221796‑M2/2‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GCAGGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGCGATGCGCTCACCCGGTTTGAGGTCGGTGTGCTGCTGCAACCAGGCAGCGAAGGCTGCCGA  >  NC_002947/5174559‑5174853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.