New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5174644 =	32 (1.010)	4 (0.130)	4/234	NT	11.9%	coding (384/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase
	?	NC_002947	5174705 =	29 (0.970)					coding (323/1689 nt)	fadD‑II	long‑chain‑fatty acid‑‑CoA ligase

GCCGGCACCATCTTCTTCAACTTGTCGACCACGGTGTTGACCAGCCAGCCCTTGGCGGCCGGCAGCAGGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGC  >  NC_002947/5174495‑5174793                                                                                                                                                      |                                                                                                                                                      tcggcagccttcgctgcctggttgcagcagcacaccgacctcaaaccgggtgagcgcatcgccgtacagatgcccaatgtgctgcagtaccccatcgccgtcttcggtgccatgcgcgccgggctgatcgtggtcaataccaacccgctg                                                                                                                                                       >  2:221796‑M1/150‑150 (MQ=255)   ggcagccttcgctgcctggttgcagcagcacaccgacctcaaaccgggtgagcgcatcgccgtacagatgcccaatgtgctgcagtaccccatcgccgtcttcggtgccatgcgcgccgggctgatcgtggtcaataccaacccgctGTa                                                                                                                                                     <  2:653614‑M1/3‑1 (MQ=255)          aTCTTCTTCAACTTGTCGACCACGGTGTTGACCAGCCAGCCCTTGGCGGCCGGCAGCAGGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAgc                                                                                                                                              >  1:339575/1‑150 (MQ=255)                            aCCACGGTGTTGACCAGCCAGCCCTTGGCGGCCGGCAGCAGGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTcc                                                                                                                            >  2:690725/1‑150 (MQ=255)                            aCCACGGTGTTGACCAGCCAGCCCTTGGCGGCCGGCAGCAGGTCACCCATCTTTGCCTCGATCAGGCATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTcc                                                                                                                            >  2:596139/1‑150 (MQ=255)                              cACGGTGTTGACCAGCCAGCCCTTGGCGGCCGGCAGCAGGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCtt                                                                                                                          <  2:773306/150‑1 (MQ=255)                               aCGGTGTTGACCAGCCAGCCCTTGGCGGCCGGCAGCAGGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGTACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCAAGCGCGCCACTGTCCTTg                                                                                                                         <  1:228943/150‑1 (MQ=255)                                cGGTGTTGACCAGCCAGCCCTTGGCGGCCGGCAGCAGGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGa                                                                                                                        >  2:165015/1‑150 (MQ=255)                                        ctcaaaccgggtgagcgcatcgccgtacagatgcccaatgtgctgcagtaccccatcgccgtcttcggtgccatgcgcgccgggctgatcgtggtcaataccaacccgctGTACACCAGCGCACGCGCGCCACTGTCCTTGAACtggtgg                                                                                                                <  1:446759‑M1/40‑1 (MQ=255)                                           agccagccCTTGGCGGCCGGCAGCAGGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGgcgc                                                                                                             >  2:676448/1‑150 (MQ=255)                                                gggtgagcgcatcgccgtacatatgcccaatgtgctgcagtaccccatcgccgtcttcggtgccatgcgcgccgggctgatcgtggtcaataccaacccgctGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCAtctc                                                                                                        >  2:841062‑M1/103‑150 (MQ=255)                                                       gcggcCGGCAGCAGGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCg                                                                                                 <  1:48542/150‑1 (MQ=255)                                                        gcatcgccgtacagatgcccaatgtgctgcagtaccccatcgccgtcttcggtgccatgcgcgccgggctgatcgtggtcaataccaacccgctGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCgg                                                                                                >  2:446759‑M1/95‑150 (MQ=255)                                                        cggccggcAGCAGGTCACCCATCTTTGCCTCGATCACGTATTCGATACCGGTATCGGGCAGCCCCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCgg                                                                                                <  1:227786/150‑1 (MQ=255)                                                         ggccggcAGCAGGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGgt                                                                                               <  2:339575/150‑1 (MQ=255)                                                            cggcCGCAGGGTACCCATGTTTGTCTCGATCAGGTATTCGATACCGGGATCGGGCAGCACTTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCGCGCGCGCCACTTTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTa                                                                                            <  2:130906/150‑1 (MQ=255)                                                                 gcagGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCg                                                                                       <  1:690725/150‑1 (MQ=255)                                                                      tCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTg                                                                                  >  1:297579/1‑150 (MQ=255)                                                                               tttGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGAACGCGCTTGCCGAACATGTTCAGTTAAACCAGCGAACGCGCGCCACTGTCCTTTAACTGGTGGCGCAGCTCGCGCACGGGGTACAGCGGGTTGGTATTGAcc                                                                         >  1:302936/1‑150 (MQ=255)                                                                                ttGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCCCGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCa                                                                        <  1:596139/150‑1 (MQ=255)                                                                                ttGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCa                                                                        >  1:102887/1‑150 (MQ=255)                                                                                 gctgcagtaccccatcgccgtcttcggtgccatgcgcgccgggctgatcgtggtcaataccaacccgcgGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCAc                                                                       >  2:392450‑M1/70‑150 (MQ=255)                                                                                   ccTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACtggtgg                                                                                                                <  1:554546/107‑1 (MQ=255)                                                                                   ccTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACtggtgg                                                                                                                >  2:554546/1‑107 (MQ=255)                                                                                   ccTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGa                                                                     <  2:102887/150‑1 (MQ=255)                                                                                    cTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGAt                                                                    >  1:153019/1‑150 (MQ=255)                                                                                       gATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAg                                                                 >  1:460868/1‑150 (MQ=255)                                                                                        aTCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGc                                                                <  2:297579/150‑1 (MQ=255)                                                                                              tATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGgcg                                                          >  2:642673/1‑150 (MQ=255)                                                                                                            aTCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGTTCGGTGTACAGCGCGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGaa                                            <  2:166444/150‑1 (MQ=255)                                                                                                               gggCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGAc                                         >  1:794017/1‑150 (MQ=255)                                                                                                                ggCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACg                                        >  1:371879/1‑150 (MQ=255)                                                                                                                     caCCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGAt                                   <  1:165015/150‑1 (MQ=255)                                                                                                                        ctcctGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATggg                                <  1:676448/150‑1 (MQ=255)                                                                                                                         tcctGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGCTCAGCCCGGCGCGCATGGCCACGACGACGGCGAtcagg                               >  1:653614/1‑146 (MQ=255)                                                                                                                                        ccGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTg                >  2:383230/1‑150 (MQ=255)                                                                                                                                          gAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTggg              <  1:642673/150‑1 (MQ=255)                                                                                                                                              aTGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATc          <  2:371879/150‑1 (MQ=255)                                                                                                                                                 ttCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATggg                                >  2:430215/1‑125 (MQ=255)                                                                                                                                                 ttCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATggg                                <  1:430215/125‑1 (MQ=255)                                                                                                                                                 ttCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGt       >  1:312298/1‑150 (MQ=255)                                                                                                                                                    aGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACg    >  1:308976/1‑150 (MQ=255)                                                                                                                                                      GTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGgc                                                           <  2:392964‑M1/93‑1 (MQ=255)                                                                                                                                                      GTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGgc                                                           >  1:392964‑M1/1‑93 (MQ=255)                                                                                                                                                      GTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGc  <  1:540210‑M1/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GCCGGCACCATCTTCTTCAACTTGTCGACCACGGTGTTGACCAGCCAGCCCTTGGCGGCCGGCAGCAGGTCACCCATCTTTGCCTCGATCAGGTATTCGATACCGGTATCGGGCAGCACCTCCTGCACGCGCTTGCCGAACATGTTCAGGTACACCAGCGCACGCGCGCCACTGTCCTTGAACTGGTGGCGCATCTCGCGCTCGGTGTACAGCGGGTTGGTATTGACCACGATCAGCCCGGCGCGCATGGCACCGAAGACGGCGATGGGGTACTGCAGCACATTGGGCATCTGTACGGC  >  NC_002947/5174495‑5174793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.