New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5243293 | 36 (1.140) | 3 (0.100) | 3/232 | NT | 8.6% | coding (1237/1302 nt) | hmgA | homogentisate 1,2‑dioxygenase |
? | NC_002947 | = 5243311 | 30 (1.010) | coding (1219/1302 nt) | hmgA | homogentisate 1,2‑dioxygenase |
GATGCCCAATGGCAGGTTCTGCAGGGGGAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5243138‑5243293 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgcaaGCCCTTGAATGCCCGCAATTGCAGGCCGACTACGATAGTTGCTG < NC_002947/5243311‑5243268 GATGCCCAATGGCAGGTTCTGCAGGGGGAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGC < 1:284095/150‑1 GCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAAGCCCTTGAATGCCCGCAATTGCAGGCCGACTACGATAGTTGCTG < 1:284317/150‑1 GCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAAGCCCTTGAATGCCCGCAATTGCAGGCCGACTACGA > 1:496513/1‑77 GCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAAGCCCTTGAATGCCCGCAATTGCAGGCCGACTACGA < 2:496513/77‑1 GATGCCCAATGGCAGGTTCTGCAGGGGGAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5243138‑5243293 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgcaaGCCCTTGAATGCCCGCAATTGCAGGCCGACTACGATAGTTGCTG < NC_002947/5243311‑5243268 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |