New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5243293	36 (1.140)	3 (0.100)	3/232	NT	8.6%	coding (1237/1302 nt)	hmgA	homogentisate 1,2‑dioxygenase
	?	NC_002947	= 5243311	30 (1.010)					coding (1219/1302 nt)	hmgA	homogentisate 1,2‑dioxygenase

AGGTTCTGCAGGGGGAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCGGGGCCATGGGCACTCATC  >  NC_002947/5243151‑5243441                                                                                                                                               |                                                                                                                                                     aGGTTCTGCAGGGGGAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCggg                                                                                                                                               <  1:397406/150‑1 (MQ=255)           gggggAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAggg                                                                                                                                     >  1:198393/1‑150 (MQ=255)            ggggAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGc                                                                                                                                    >  1:413655/1‑150 (MQ=255)                aaGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCCGCAATTGCAGGccga                                                                                                                                           <  2:114128/139‑4 (MQ=255)                aaGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCCGCAATTGCAGGccga                                                                                                                                           >  1:114128/1‑136 (MQ=255)                     gCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCt                                                                                                                           >  2:462660/1‑150 (MQ=255)                        gtgCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCgg                                                                                                                        <  1:530216/150‑1 (MQ=255)                         tccccATTGGTGTGCTCGTCCCAGCTACGGTCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGTCAAAGTCGCCCAGCAACTATCGTAGTCGCCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCggg                                                                                                                       <  1:423778/148‑1 (MQ=255)                          gCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGgc                                                                                                                      >  1:477279/1‑150 (MQ=255)                                      gCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAAgcccttgaatgcccgcaattgcaggccgactacgatagttgctg                                                                                                          <  1:284317‑M1/150‑45 (MQ=255)                                                 cTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAAc                                                                                               <  1:80395/150‑1 (MQ=255)                                                  tACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACa                                                                                              >  2:116337/1‑150 (MQ=255)                                                          ttGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGcc                                                                                      >  1:64954/1‑150 (MQ=255)                                                               agagTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGgt                                                                                 >  1:354033/1‑150 (MQ=255)                                                                           ggATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCtt                                                                     <  2:477279/150‑1 (MQ=255)                                                                              ttATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTtgtg                                                                  <  2:263732/150‑1 (MQ=255)                                                                              ttATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTtgtg                                                                  <  1:116337/150‑1 (MQ=255)                                                                                   tcCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGgcg                                                             >  2:686156/1‑150 (MQ=255)                                                                                    ccGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGgcgc                                                            >  2:268355/1‑150 (MQ=255)                                                                                       gtgcGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAg                                                         <  2:354033/147‑1 (MQ=255)                                                                                       gTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAg                                                         <  1:303663/150‑1 (MQ=255)                                                                                           gggTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTCTCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGgc                                                              <  2:616982/141‑1 (MQ=255)                                                                                           gggTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGgc                                                              >  1:616982/1‑141 (MQ=255)                                                                                             gTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGACATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGc                                                   >  1:362272/1‑150 (MQ=255)                                                                                             gTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGATCGGGCCCAACACTTGGCTGGTCTCTAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGc                                                   <  2:413655/150‑1 (MQ=255)                                                                                              ttGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCg                                                  <  2:198393/150‑1 (MQ=255)                                                                                                   ggTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAAt                                             <  1:462660/150‑1 (MQ=255)                                                                                                     tGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATgg                                           >  1:640376/1‑150 (MQ=255)                                                                                                      gCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAAgcccttgaatgcccgcaattgcaggccgactacga                                                                                                                   >  1:496513‑M1/1‑42 (MQ=255)                                                                                                      gCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAAgcccttgaatgcccgcaattgcaggccgactacga                                                                                                                   <  2:496513‑M1/77‑36 (MQ=255)                                                                                                        tCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAg                                                                                         <  1:747924/101‑1 (MQ=255)                                                                                                        tCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAg                                                                                         >  2:747924/1‑101 (MQ=255)                                                                                                        tCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCt                                        >  1:220435/1‑150 (MQ=255)                                                                                                         cGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCtt                                       <  1:686156/150‑1 (MQ=255)                                                                                                            cAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTc                                    <  2:362272/150‑1 (MQ=255)                                                                                                             aaaGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGACTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCTAATGCCTTTTcc                                   >  1:558467/1‑149 (MQ=255)                                                                                                                      cAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAgg                                                                                                                                      >  2:300900/1‑42 (MQ=255)                                                                                                                      cAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAgg                                                                                                                                      <  1:300900/42‑1 (MQ=255)                                                                                                                      cAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCttgcaggccgactacgatagttgctgggcgactttgccgagcaccttcaacccgaaccggagataatccatgaaccactctgccaatgcccgtagctgggtcgagc                          <  1:284317‑M2/150‑107 (MQ=255)                                                                                                                            cTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCg                    <  2:64954/150‑1 (MQ=255)                                                                                                                               tCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCttgcaggccgactacgatagttgctgggcgactttgccgagc                                                                                          >  1:496513‑M2/1‑35 (MQ=255)                                                                                                                               tCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCttgcaggccgactacgatagttgctgggcgactttgccgagc                                                                                          <  2:496513‑M2/77‑43 (MQ=255)                                                                                                                                              aaTTGCGGGCATTCAAGGGCTTGCAAGCTCGGGCGGAATATTTACGTGCTGGACTTCAGGAAGGCCATGATTGGTTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCGGGGCAATGGGCACtcatc  >  1:149762/1‑150 (MQ=255)                                                                                                                                               |                                                                                                                                                     AGGTTCTGCAGGGGGAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCGGGGCCATGGGCACTCATC  >  NC_002947/5243151‑5243441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.