New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5243293	36 (1.140)	3 (0.100)	3/232	NT	8.6%	coding (1237/1302 nt)	hmgA	homogentisate 1,2‑dioxygenase
	?	NC_002947	= 5243311	30 (1.010)					coding (1219/1302 nt)	hmgA	homogentisate 1,2‑dioxygenase

GGGGAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCGGGGCCATGGGCACTCATCACCCCGTGCAACGAGGCA  >  NC_002947/5243162‑5243459                                                                                                                                                      |                                                                                                                                                     ggggAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGc                                                                                                                                                      >  1:413655/1‑150 (MQ=255)          gCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCt                                                                                                                                             >  2:462660/1‑150 (MQ=255)             gtgCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCgg                                                                                                                                          <  1:530216/150‑1 (MQ=255)              tccccATTGGTGTGCTCGTCCCAGCTACGGTCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGTCAAAGTCGCCCAGCAACTATCGTAGTCGCCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCggg                                                                                                                                         <  1:423778/148‑1 (MQ=255)               gCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGgc                                                                                                                                        >  1:477279/1‑150 (MQ=255)                                      cTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAAc                                                                                                                 <  1:80395/150‑1 (MQ=255)                                       tACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACa                                                                                                                >  2:116337/1‑150 (MQ=255)                                               ttGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGcc                                                                                                        >  1:64954/1‑150 (MQ=255)                                                    agagTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGgt                                                                                                   >  1:354033/1‑150 (MQ=255)                                                                ggATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCtt                                                                                       <  2:477279/150‑1 (MQ=255)                                                                   ttATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTtgtg                                                                                    <  1:116337/150‑1 (MQ=255)                                                                   ttATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTtgtg                                                                                    <  2:263732/150‑1 (MQ=255)                                                                        tcCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGgcg                                                                               >  2:686156/1‑150 (MQ=255)                                                                         ccGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGgcgc                                                                              >  2:268355/1‑150 (MQ=255)                                                                            gtgcGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAg                                                                           <  2:354033/147‑1 (MQ=255)                                                                            gTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAg                                                                           <  1:303663/150‑1 (MQ=255)                                                                                gggTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTCTCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGgc                                                                                <  2:616982/141‑1 (MQ=255)                                                                                gggTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGgc                                                                                >  1:616982/1‑141 (MQ=255)                                                                                  gTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGACATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGc                                                                     >  1:362272/1‑150 (MQ=255)                                                                                  gTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGATCGGGCCCAACACTTGGCTGGTCTCTAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGc                                                                     <  2:413655/150‑1 (MQ=255)                                                                                   ttGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCg                                                                    <  2:198393/150‑1 (MQ=255)                                                                                        ggTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAAt                                                               <  1:462660/150‑1 (MQ=255)                                                                                          tGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATgg                                                             >  1:640376/1‑150 (MQ=255)                                                                                             tCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAg                                                                                                           >  2:747924/1‑101 (MQ=255)                                                                                             tCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAg                                                                                                           <  1:747924/101‑1 (MQ=255)                                                                                             tCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCt                                                          >  1:220435/1‑150 (MQ=255)                                                                                              cGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCtt                                                         <  1:686156/150‑1 (MQ=255)                                                                                                 cAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTc                                                      <  2:362272/150‑1 (MQ=255)                                                                                                  aaaGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGACTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCTAATGCCTTTTcc                                                     >  1:558467/1‑149 (MQ=255)                                                                                                           cAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCttgcaggccgactacgatagttgctgggcgactttgccgagcaccttcaacccgaaccggagataatccatgaaccactctgccaatgcccgtagctgggtcgagc                                            <  1:284317‑M2/150‑107 (MQ=255)                                                                                                                 cTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCg                                      <  2:64954/150‑1 (MQ=255)                                                                                                                    tCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCttgcaggccgactacgatagttgctgggcgactttgccgagc                                                                                                            <  2:496513‑M2/77‑43 (MQ=255)                                                                                                                    tCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCttgcaggccgactacgatagttgctgggcgactttgccgagc                                                                                                            >  1:496513‑M2/1‑35 (MQ=255)                                                                                                                                   aaTTGCGGGCATTCAAGGGCTTGCAAGCTCGGGCGGAATATTTACGTGCTGGACTTCAGGAAGGCCATGATTGGTTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCGGGGCAATGGGCACtcatc                    >  1:149762/1‑150 (MQ=255)                                                                                                                                     ttGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCGGGGCCATGGGCACTCATCAc                  >  2:189970/1‑150 (MQ=255)                                                                                                                                        cGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCGGGGCCATGGGCACTCATCAcccc               <  2:220435/150‑1 (MQ=255)                                                                                                                                             aTTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGTTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCGGGGCCATGGGCACTCATCACCCCGTGCa          >  1:732224/1‑150 (MQ=255)                                                                                                                                                    ggCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCGGGGCCATGGGCACTCATCACCCCg              >  1:697031/1‑139 (MQ=255)                                                                                                                                                    ggCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCGGGGCCATGGGCACTCATCACCCCg              <  2:697031/139‑1 (MQ=255)                                                                                                                                                     gCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCGGGGCCATGGGCACTCATCACCCCGTGCAACGAGGca  <  1:268355/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GGGGAAGTCGCTGTGCCCGTTGGCGTGCTCGACCCAGCTACGGGCATTGGCAGAGTGGTTCATGGATTATCTCCGGTTCGGGTTGAAGGTGCTCGGCAAAGTCGCCCAGCAACTATCGTAGTCGGCCTGCAATTGCGGGCATTCAAGGGCTTGCAGGCTCGGGCGCAACACTTGGCTGGTCTCGAACATGAAGGCCATGGTGTTGTCGATCTTGTGTGGCGCCAGGTCAGCGGCAATGGCCTTTTCACAGGTTTCGGCGTCGGGGCCATGGGCACTCATCACCCCGTGCAACGAGGCA  >  NC_002947/5243162‑5243459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.