New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5430415 =	38 (1.200)	10 (0.340)	10/230	NT	21.2%	intergenic (‑49/+112)	PP_4769/PP_4770	hypothetical protein/hypothetical protein
	?	NC_002947	5430484 =	39 (1.330)					intergenic (‑118/+43)	PP_4769/PP_4770	hypothetical protein/hypothetical protein

TGACGGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCGATACCTGTGGGAGCGGGCGTGTCCGCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5430566‑5430415 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTTGTC  >  NC_002947/5430484‑5430625                                                                                                                                                                                                                                                                                                        TGACGGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCGATACCTGTGGGAGCGGGCGTGTCCGCGAA                                                                                                                                                  <  2:430604/150‑1                                                                                                       TCCCACGGGTGTACGCGCGATACCTGTGGGAGCGGGCGTGTCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAA                                                                          <  1:629671/120‑1                                                                                                       TCCCACGGGTGTACGCGCGATACCTGTGGGAGCGGGCGTGTCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAA                                                                          >  2:629671/1‑120                                                                                                        CCCACGGGTGTACGCGCGATACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCG                                           >  1:588843/1‑150                                                                                                         CCACGGGTGTACGCGCGATACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGT                                          >  1:785261/1‑150                                                                                                           ACGGGTGTACGCGCGATACCTGTGGGAGCGGGCGTGTCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAA                                                                                        >  1:702077/1‑102                                                                                                           ACGGGTGTACGCGCGATACCTGTGGGAGCGGGCGTGTCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAA                                                                                        <  2:702077/102‑1                                                                                                                    CGCGCGATACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAA                                                                                           >  1:55225/1‑90                                                                                                                    CGCGCGATACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAA                                                                                           <  2:55225/90‑1                                                                                                                      CGCGATACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCC                             <  2:785261/150‑1                                                                                                                               TGTGGGAGCGGGCGTGTCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACT                    >  2:616445/1‑150                                                                                                                                                CCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTTGT   >  1:258455/1‑150                                                                                                                                                CCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTTGT   <  2:84612/150‑1                                                                                                                                                 CGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTAATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTTGTC  <  1:72714/150‑1                                                                                                                                                                                                                                                                                                        TGACGGTGGGTTCTTCTCGGACGACGATTCTTACGTCTGACAGGTCTGGCATACTGCTGGCATTTCCGGGGGCGCTTTGCGCCCCTTCGCGGGCACGCCCGCTCCCACGGGTGTACGCGCGATACCTGTGGGAGCGGGCGTGTCCGCGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5430566‑5430415 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTTGTC  >  NC_002947/5430484‑5430625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.