New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5430415 =	38 (1.200)	10 (0.340)	10/230	NT	21.2%	intergenic (‑49/+112)	PP_4769/PP_4770	hypothetical protein/hypothetical protein
	?	NC_002947	5430484 =	39 (1.330)					intergenic (‑118/+43)	PP_4769/PP_4770	hypothetical protein/hypothetical protein

GGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTTGTC  >  NC_002947/5430343‑5430625                                                                                                                                                |                                                                                                                                              ggCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAg                                                                                                                                       >  1:55621/1‑150 (MQ=255)     aaCAGTGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGcc                                                                                                                                   <  1:253522/150‑1 (MQ=255)     aaCAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGcc                                                                                                                                   <  2:445802/150‑1 (MQ=255)       cAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGcccc                                                                                                                                 <  2:55621/150‑1 (MQ=255)         gcgcGATCTTTTTCATCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGCGCTG‑‑ACGTCTTCCTCGGCAGCGGTACGCCCGCTCCCACGGGTATCGAGCGTACACCCGTGGGTGCGTTCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCg                                                                                                                               <  1:619426/150‑1 (MQ=255)                  ttttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCca                                                                                                                      <  2:18816/150‑1 (MQ=255)                  ttttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCca                                                                                                                      >  1:235698/1‑150 (MQ=255)                  ttttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCca                                                                                                                      <  1:383973/150‑1 (MQ=255)                       aCCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGt                                                                                                                 >  1:84612/1‑150 (MQ=255)                       aCCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGt                                                                                                                 >  1:373302/1‑150 (MQ=255)                           gggAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGc                                                                                                             >  1:350426/1‑150 (MQ=255)                             gAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGGGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCa                                                                                                           >  1:687050/1‑150 (MQ=255)                                 cTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGAcc                                                                                                       >  1:143592/1‑150 (MQ=255)                                  tCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCt                                                                                                      <  1:183475/150‑1 (MQ=255)                                      ttttGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCa                                                                                                  <  2:143592/150‑1 (MQ=255)                                           gCCTGGAGGGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGt                                                                                             >  1:573332/1‑150 (MQ=255)                                                      cGGGGGGCGGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAAtcgtcg                                                                                  >  2:80897/1‑150 (MQ=255)                                                       ggggggCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATcgtcgt                                                                                 <  2:235698/150‑1 (MQ=255)                                                        gggggCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCgtcgtc                                                                                >  2:760113/1‑150 (MQ=255)                                                         ggggCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTCCACACGTGGGAGAGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTcc                                                                               <  1:383074/150‑1 (MQ=255)                                                           ggCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGACAGCAGTATGCTAGACCTGTCAGACGTACGAATCGTAGTCCga                                                                             >  1:256626/1‑150 (MQ=255)                                                                 tgcGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAgaagaa                                                                       <  1:760113/150‑1 (MQ=255)                                                                    gcAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAAcc                                                                     <  2:588791/149‑1 (MQ=255)                                                                    gcAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAAcc                                                                     >  1:588791/1‑149 (MQ=255)                                                                           TTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCa                                                             <  2:430604‑M1/150‑1 (MQ=255)                                                                                        gCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAAtcgtc                                                                                   >  1:711201/1‑117 (MQ=255)                                                                                        gCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAAtcgtc                                                                                   <  2:711201/117‑1 (MQ=255)                                                                                          ccGCTCCCACAGGTATCGCGCGTACACCCGTAGGAGCGCACCAGCCCGCAAAGGCGAGCAAAGCACCCCCGGAAATGCCATCAGTATGCCATACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAac                                                >  2:313499/1‑150 (MQ=255)                                                                                              tcccacgggtgtacgcgcgatacctgtgggagcgggcgtgtccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGagaa                                                                          <  1:629671‑M2/70‑1 (MQ=255)                                                                                              tcccacgggtgtacgcgcgatacctgtgggagcgggcgtgtccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGagaa                                                                          >  2:629671‑M2/51‑120 (MQ=255)                                                                                               cccacgggtgtacgcgcgatacctgtgggagcgggcgtgcccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCg                                           >  1:588843‑M2/50‑150 (MQ=255)                                                                                                ccacgggtgtacgcgcgatacctgtgggagcgggcgtgcccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGt                                          >  1:785261‑M2/49‑150 (MQ=255)                                                                                                ccACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGt                                          <  2:373302/150‑1 (MQ=255)                                                                                                ccACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGt                                          >  1:676575/1‑150 (MQ=255)                                                                                                ccACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCAACCGTCATCGCTGCCAAAACCACCGt                                          >  1:293943/1‑150 (MQ=255)                                                                                                  acgggtgtacgcgcgatacctgtgggagcgggcgtgtccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGaa                                                                                        <  2:702077‑M2/56‑1 (MQ=255)                                                                                                  acgggtgtacgcgcgatacctgtgggagcgggcgtgtccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGaa                                                                                        >  1:702077‑M2/47‑102 (MQ=255)                                                                                                  acaGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGgc                                                                                                                                             >  1:252970/1‑49 (MQ=255)                                                                                                  acaGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGgc                                                                                                                                             <  2:252970/49‑1 (MQ=255)                                                                                                   caGGTAGCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCTGGAAATGCCAGCAGTATGCCAGACCTGGCAGACGTAACAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCAAGACACACCGTCgt                                       <  2:296176/150‑2 (MQ=255)                                                                                                    aGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTACGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGc                                      <  1:182350/150‑1 (MQ=255)                                                                                                      gTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAAtcgtc                                                                                   <  2:115874/103‑1 (MQ=255)                                                                                                      gTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAAtcgtc                                                                                   >  1:115874/1‑103 (MQ=255)                                                                                                           cgcgcgatacctgtgggagcgggcgtgcccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTaa                                                                                           <  2:55225‑M2/53‑1 (MQ=255)                                                                                                           cgcgcgatacctgtgggagcgggcgtgcccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTaa                                                                                           >  1:55225‑M2/38‑90 (MQ=255)                                                                                                             gcgTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGcc                             <  2:573332/150‑1 (MQ=255)                                                                                                             cgcgatacctgtgggagcgggcgtgcccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGcc                             <  2:785261‑M2/115‑1 (MQ=255)                                                                                                                     ccGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCAc                     >  1:819350/1‑150 (MQ=255)                                                                                                                     ccGTGGGAGCGGGCGTGCCAGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCCGACCTGTCAGCCGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCAc                     >  2:59009/1‑150 (MQ=255)                                                                                                                      tgtgggagcgggcgtgtccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACt                    >  2:616445‑M2/27‑150 (MQ=255)                                                                                                                        tGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGc                                                         >  1:366348/1‑111 (MQ=255)                                                                                                                        tGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGc                                                         <  2:366348/111‑1 (MQ=255)                                                                                                                                  cGTGCCCGCGAAGGGGCGCAAAGCGCTCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCAcc        <  2:256626/150‑1 (MQ=255)                                                                                                                                     gCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGtt     <  1:423448/150‑1 (MQ=255)                                                                                                                                     gCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGtt     <  1:80897/150‑1 (MQ=255)                                                                                                                                       ccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTTGt   >  1:258455‑M2/10‑150 (MQ=255)                                                                                                                                       ccgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTTGt   <  2:84612‑M2/141‑1 (MQ=255)                                                                                                                                        cgcgaaggGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTAATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTTGTc  <  1:72714‑M2/142‑1 (MQ=255)                                                                                                                                                |                                                                                                                                              GGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACCCACCGTCATCGCTGCCAAAACCACCGTCGGCGTATCCGCCCTGGTCACTGCCCCAGCCACCGTTGTC  >  NC_002947/5430343‑5430625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.