New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5430415 =	38 (1.200)	10 (0.340)	10/230	NT	21.2%	intergenic (‑49/+112)	PP_4769/PP_4770	hypothetical protein/hypothetical protein
	?	NC_002947	5430484 =	39 (1.330)					intergenic (‑118/+43)	PP_4769/PP_4770	hypothetical protein/hypothetical protein

GGCCCACAGGGCGGTGTAGTTGAAATGGCAGCCGTGGGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACC  >  NC_002947/5430271‑5430558                                                                                                                                                 |                                                                                                                                                  ggaccACAGGGCGGTGTAGTTGAAATGGCAGCCGTGGGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTcg                                                                                                                                              >  2:383973/4‑150 (MQ=255) ggCCCACAGGGCGGTGTAGTTGAAATGGCAGCCGTGGGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTcg                                                                                                                                              >  2:300990/1‑150 (MQ=255)  gCCCACAGGGCGGTGTAGTTGAAATGGCAGCCGTGGGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTcgc                                                                                                                                             >  1:633142/1‑150 (MQ=255)   gacaacggtggctggggcagtgaccagggcggatacgccgacggtggttttggcagcgattacggtgggttcttctcggacgacgattcttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccCCTTcgc‑g                                                                                                                                           <  1:72714‑M1/8‑1 (MQ=255)    acaacggtggctggggcagtgaccagggcggatacgccgacggtggttttggcagcgatgacggtgggttcttctcggacgacgattcttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccCCTTCGC‑g‑g                                                                                                                                         <  2:84612‑M1/9‑1 (MQ=255)    acaacggtggctggggcagtgaccagggcggatacgccgacggtggttttggcagcgatgacggtgggttcttctcggacgacgattcttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccCCTTCGC‑g‑g                                                                                                                                         >  1:258455‑M1/142‑150 (MQ=255)             ggTGTAGTTGAAATGGCAGCCGTGGGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCTAGCGGTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCg                                                                                                                                <  2:69504/150‑1 (MQ=255)                    ttGAAATGGCAGCCGTGGGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCcac                                                                                                                         >  2:619426/1‑150 (MQ=255)                    ttGAAATGGCAGCCGTGGGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCcac                                                                                                                         >  2:383074/1‑150 (MQ=255)                     tGAAATGGCAGCCGTGGGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCcaca                                                                                                                        <  1:546800/150‑1 (MQ=255)                     agtgaccagggcggatacgccgacggtggttttggcagcgatgacggtgggttcttctcggacgacgattcttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccCCTTCGC‑G‑GACACGCCCGCTCCcaca                                                                                                                        >  2:616445‑M1/125‑150 (MQ=255)                      gAAATGGCAGCCGTGGGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAg                                                                                                                       <  1:300990/150‑1 (MQ=255)                             cAGCCGTGGGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATcgc                                                                                                                >  2:72714/1‑150 (MQ=255)                              ggcggatacgccgacggtggttttggcagcgatgacggtgggttcttctcggacgacgattcttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccCCTTCGC‑G‑GGCACGCCCGCTCCCACAGGTATcgcg                                                                                                               <  2:785261‑M1/35‑1 (MQ=255)                               gCCGTGGGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATcgcgc                                                                                                              <  1:331895/150‑1 (MQ=255)                                    gggCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATATTTTTCCCCTGGGTCCCTCCTTTTTGGCCTGGAGTGCCGGGGCGCTGCTGCGTAGACCTTCGC‑T‑GACACGCCCGCTCCCACAGGTATCGCGCGTaca                                                                                                         <  2:524510/150‑1 (MQ=255)                                           acggtggttttggcagcgatgacggtgggttcttctcggacgacgattcttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccCCTTCGC‑G‑GGCACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTgg                                                                                                  >  1:785261‑M1/103‑150 (MQ=255)                                            cggtggttttggcagcgatgacggtgggttcttctcggacgacgattcttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccCCTTCGC‑G‑GGCACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTggg                                                                                                 >  1:588843‑M1/102‑150 (MQ=255)                                                 ggTGTAGTCGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTGCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCgg                                                                                            >  2:423448/1‑150 (MQ=255)                                                   tgtAGTAGAGTCTCTGCAGATCGGCGAACGGCGCGATATTCTTCCCCTGCTCGCCTCATTTCTGGTCTGGAGTGCGGGGCGGCTGCTGCGCAGCCCTTCGC‑G‑GGCACGCCCGCTGCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGc                                                                                          <  2:264456/150‑1 (MQ=25)                                                          gagGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAAACTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCcg                                                                                   >  1:296176/1‑150 (MQ=255)                                                             gTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACGGGt                                                                                                                     >  1:427308/1‑113 (MQ=255)                                                             gTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACGGGt                                                                                                                     <  2:427308/113‑1 (MQ=255)                                                                         ggCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAg                                                                    >  1:55621/1‑150 (MQ=255)                                                                           ttctcggacgacgattcttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccCCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGa                                                                                                >  2:629671‑M1/71‑120 (MQ=255)                                                                           ttctcggacgacgattcttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccCCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGa                                                                                                <  1:629671‑M1/50‑1 (MQ=255)                                                                             aaCAGTGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGcc                                                                <  1:253522/150‑1 (MQ=255)                                                                             aaCAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGcc                                                                <  2:445802/150‑1 (MQ=255)                                                                               cAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGcccc                                                              <  2:55621/150‑1 (MQ=255)                                                                                 gcgcGATCTTTTTCATCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGCGCTG‑‑ACGTCTTCCTCGGCAGCGGTACGCCCGCTCCCACGGGTATCGAGCGTACACCCGTGGGTGCGTTCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCg                                                            <  1:619426/150‑1 (MQ=255)                                                                                         ttcttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccCCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGt                                                                                                    >  1:702077‑M1/57‑102 (MQ=255)                                                                                         ttcttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccCCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGt                                                                                                    <  2:702077‑M1/46‑1 (MQ=255)                                                                                          ttttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCca                                                   <  2:18816/150‑1 (MQ=255)                                                                                          ttttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCca                                                   <  1:383973/150‑1 (MQ=255)                                                                                          ttttCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCca                                                   >  1:235698/1‑150 (MQ=255)                                                                                            ttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccCCTTCGC‑G‑GGCACGCCCGCTCCCACAGGTATcgcgcg                                                                                                             >  1:55225‑M1/54‑90 (MQ=255)                                                                                            ttacgtctgacaggtctggcatactgctggcatttccgggggcgctttgcgccCCTTCGC‑G‑GGCACGCCCGCTCCCACAGGTATcgcgcg                                                                                                             <  2:55225‑M1/37‑1 (MQ=255)                                                                                               aCCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGt                                              >  1:84612/1‑150 (MQ=255)                                                                                               aCCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGt                                              >  1:373302/1‑150 (MQ=255)                                                                                                   gggAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGc                                          >  1:350426/1‑150 (MQ=255)                                                                                                     gAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGGGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCa                                        >  1:687050/1‑150 (MQ=255)                                                                                                         cTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGAcc                                    >  1:143592/1‑150 (MQ=255)                                                                                                          tCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCt                                   <  1:183475/150‑1 (MQ=255)                                                                                                              ttttGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCa                               <  2:143592/150‑1 (MQ=255)                                                                                                                   gCCTGGAGGGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGt                          >  1:573332/1‑150 (MQ=255)                                                                                                                              cGGGGGGCGGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAAtcgtcg               >  2:80897/1‑150 (MQ=255)                                                                                                                               ggggggCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATcgtcgt              <  2:235698/150‑1 (MQ=255)                                                                                                                                gggggCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCgtcgtc             >  2:760113/1‑150 (MQ=255)                                                                                                                                 ggggCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTCCACACGTGGGAGAGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTcc            <  1:383074/150‑1 (MQ=255)                                                                                                                                   ggCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGACAGCAGTATGCTAGACCTGTCAGACGTACGAATCGTAGTCCga          >  1:256626/1‑150 (MQ=255)                                                                                                                                         tgcGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAgaagaa    <  1:760113/150‑1 (MQ=255)                                                                                                                                            gcAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAAcc  <  2:588791/149‑1 (MQ=255)                                                                                                                                            gcAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAAcc  >  1:588791/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                  GGCCCACAGGGCGGTGTAGTTGAAATGGCAGCCGTGGGCCTGGCGCACGGTGTAGTAGAGGTTCTGCACATCGGCGAACAGCGCGATCTTTTTCACCTGGGAACCTCATTTTTGGCCTGGAGTGCCGGGGGGCTGCTGCGCAGACCTTCGC‑G‑GACACGCCCGCTCCCACAGGTATCGCGCGTACACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCGCAAAGCGCCCCCGGAAATGCCAGCAGTATGCCAGACCTGTCAGACGTAAGAATCGTCGTCCGAGAAGAACC  >  NC_002947/5430271‑5430558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.