New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6062179	43 (1.360)	4 (0.130)	4/242	NT	9.5%	coding (581/1149 nt)	alkT	rubredoxin‑NAD(+) reductase
	?	NC_002947	= 6062220	34 (1.100)					coding (540/1149 nt)	alkT	rubredoxin‑NAD(+) reductase

GTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6062067‑6062179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGCTGGA  <  NC_002947/6062220‑6062173                                                                                                                                                                   GTCGCAGGCGCTCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGGAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAG             <  1:557471/150‑1      AGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGG        >  1:140595/1‑150        GCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGC      <  2:444763/150‑1            TCACGCTGCCGTCCGAAAAGTGCGCCTCAAGGCATTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGCTGGA  <  2:140595/150‑1                                                                                                                                                                   GTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6062067‑6062179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGCTGGA  <  NC_002947/6062220‑6062173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.